View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_130 (Length: 354)
Name: NF10145A_low_130
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_130 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 7290642 - 7290996
Alignment:
| Q |
1 |
atgtcgaagaaaataacacgtgcatgtgctggcaaaaagatcccaggctccgagatgtctaactcttaacatctctttagcatgtgtttgccttaacgat |
100 |
Q |
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| T |
7290642 |
atgtcaaacaaaataacacgtgcatgtgctggcaaaaagatcccaggctccgagatgtctgactcttaacatctctttggcgtgtgtttgccttaatgat |
7290741 |
T |
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| Q |
101 |
gcgttcacaatttatgtgttgaaaaaccatgttgcccgcaaaagtttgcttttggagcttctgtaaatcacagtgaaatcgccataaacatgcatttggc |
200 |
Q |
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| T |
7290742 |
gcgttcacaatttatgtgttgaaaaaccatgttgcccgcaaaagcttgcttttggagcttctgtaaatcacggtgaaatcgccataaacatgcatttggc |
7290841 |
T |
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| Q |
201 |
gacagaaacgcacaa-caaacaggtagatagtcttagaagtataagctttcaaaactgtgcaagtagtaaaaacagaatatacagagagctttgtagcca |
299 |
Q |
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| T |
7290842 |
gacggaaacgcacaaccaaacaggtagatagtcttagaagtataagctttcaaaactgtgcaagtagtaaaaacagaatatacagagagctttgtagcca |
7290941 |
T |
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| Q |
300 |
aatgcaattggacaaaatccaaaacagatttatattcacctacaaagcaaaatga |
354 |
Q |
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| T |
7290942 |
aatgcaattggacaaaatccaaaacagatttatattcacctacaaagcaaaatga |
7290996 |
T |
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