View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_131 (Length: 353)
Name: NF10145A_low_131
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_131 |
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Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 2162955 - 2163302
Alignment:
| Q |
1 |
tcaggtagttcttttcctttgactctagaactttgggattgaattaccggtgtatcagtgttttcttttttactgtgaatttgagagtaaaacacatagc |
100 |
Q |
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| T |
2162955 |
tcaggtagttcttttcctttgactctagaactttgggattgaattaccggtgtatcagtgttttcttttttactgtgaatgtgagagtaaaacacatagc |
2163054 |
T |
|
| Q |
101 |
cccagttaaatcatatattttatttgtgaggacagagtcagtagcggagtggctgttctgaaaagaatttaggttatttctttataaaaagtggtgttag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2163055 |
cccagttaaatcatatattttatttgtgaggacagagtcagtagtggagtggctgttctgaaaagaatttaggttatttctttataaaaagcggtgttag |
2163154 |
T |
|
| Q |
201 |
attttgatgtcactttttaactattaactggtcttttataactttcgatagtgtatcttgggtcttttcctatagtattccgttgtagatttgccttgca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2163155 |
attttgatgtcactttttaactattaactggtcttt--taactttctatagtgtatcttgggtcttttcctattgtattccgttgtagatttgccttgca |
2163252 |
T |
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| Q |
301 |
ctcaatatatggcatgcaatctgtatctggtccctgattttattcgacat |
350 |
Q |
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||||||||||| |||||||||||| ||||||||||||||||||||||||| |
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| T |
2163253 |
ctcaatatatgacatgcaatctgtgtctggtccctgattttattcgacat |
2163302 |
T |
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