View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_134 (Length: 351)
Name: NF10145A_low_134
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_134 |
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Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 14 - 335
Target Start/End: Original strand, 27750285 - 27750606
Alignment:
| Q |
14 |
catcatctatttctaaaaccaatatgtcttgtttgagtactatttcatcgtattggtgatggatatcttttataccaaaccttggccttcccgattattg |
113 |
Q |
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| T |
27750285 |
catcatctatttctaaaaccaatatgtcttgtttgagtactatttcatcgtattggtgatggatatcttttataccaaaccttggccttcccgattattg |
27750384 |
T |
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| Q |
114 |
aatttgggaatagcctcatgaatattgcctcttcttcggattgtgaagcgcctaatgatcctatttcataaaatttcaccaaatgagttttggggtcctc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27750385 |
aatttgggaatagcctcatgaatattgcctcttcttcggattgtgaagcgcctaatgatcctatttcataaaatttcaccaaatgagttttggggtcctc |
27750484 |
T |
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| Q |
214 |
atgatccattctcactaacggattagcttacaggatttgcagaactcccatcttaatttcaattttcctttaattgggtcctagcctatgaatatgtgct |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27750485 |
atgatccattctcactaacggattagcttacaggatttgcagaactcccatcttaatttcaattttcctttaattgggtcctagcctatgaatatgtgct |
27750584 |
T |
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| Q |
314 |
agttttctttgactgttgatgt |
335 |
Q |
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|||||||||||||||||||||| |
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| T |
27750585 |
agttttctttgactgttgatgt |
27750606 |
T |
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