View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_138 (Length: 347)
Name: NF10145A_low_138
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_138 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 16 - 347
Target Start/End: Complemental strand, 55423849 - 55423518
Alignment:
| Q |
16 |
acagggaagaggccatgaatcccgggagtattggtttcaacactggagaacctcgcatacaattgtattttttgctgggtctagtctatgctgcggtgac |
115 |
Q |
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| T |
55423849 |
acagggaagaggccatgaatcccgggagtattggtttcaacactggagaacctcgcatacaattgtattttttgctgggtctagtctatgctgcagtgac |
55423750 |
T |
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| Q |
116 |
accaactgttcttcctttcataataattttcttcgggttggcctatgttgtgttccgccatcaggtaatgagatgtttgaattatgttgtgcatgtcagg |
215 |
Q |
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| T |
55423749 |
accaactgttcttcctttcataataattttcttcgggttggcctatgttgtgttccgccatcaggtaatgagatgtttgaattatgttgtgcatgtcagg |
55423650 |
T |
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| Q |
216 |
gtcaagtatgattgtagaatttgggtcctctgtttatgttgccatatacaagatgaagactcatatcttccaattgcagataatcaatgtttataatcaa |
315 |
Q |
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| T |
55423649 |
gtcaagtatgattgtagaatttgggtcctctgtttatgttgccatatacaagatgaagactcatatcttccaattgcagataatcaatgtttataatcaa |
55423550 |
T |
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| Q |
316 |
gagtacgagagtggtgcagcgttctggcctga |
347 |
Q |
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| T |
55423549 |
gagtacgagagtggcgcagcgttctggcctga |
55423518 |
T |
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