View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_139 (Length: 346)
Name: NF10145A_low_139
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_139 |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 7176933 - 7176594
Alignment:
| Q |
1 |
atcattactaggctcaaatccatctcaactcgccgaaataaactccgtttctttaaacgaaacattcgaaacaaacaaaatggtaattgttcctgtcaat |
100 |
Q |
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| T |
7176933 |
atcattactaggctcaaatccatctcaactcgccgaaataaactccgtttctttaaacgaaacattcgaaacaaacaaaatggtaattgttcctgtcaat |
7176834 |
T |
|
| Q |
101 |
tgttcttgttctggtaactattatcaagcaaatacatcctatgtttttcaaaacacagacacttattttatagttgctaacaacacttttgaaggacttt |
200 |
Q |
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| T |
7176833 |
tgttcttgttctggtaactattatcaagcaaatacatcctatgtttttcaaaacacagacacttattttatagttgctaacaacacttttgaaggacttt |
7176734 |
T |
|
| Q |
201 |
caacatgtcaagctttgatgcatgaaaatcataatcctggtgatgtatatcctggtagaaaactactcgttcctcttagatgtgcttgtcccacaaagaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
7176733 |
caacatgtcaagctttgatgcatgaaaatcataatcctggtgatgtatatcctggtagaaaactacttgttcctcttagatgtgcttgtcctacaaagaa |
7176634 |
T |
|
| Q |
301 |
tcaaactcagaaaaacataaagtatcttttgagttatttg |
340 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
7176633 |
tcaaactcagaaaaacataaagtatcttttgagttatttg |
7176594 |
T |
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