View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_14 (Length: 471)
Name: NF10145A_low_14
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 7 - 269
Target Start/End: Complemental strand, 29584183 - 29583921
Alignment:
| Q |
7 |
ctaaatatcgtgtcaaatccttccatgtttgacaagtaaatttggtttgtactttatgttaacaaataattttgttatcttgaaaaagctttgattctac |
106 |
Q |
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| T |
29584183 |
ctaaatatcgtgtcaaatccttccatgtttgacaagtaaatttggtttgtactttatgttaacaaataattttgttatcttgaaaaagctttgattctac |
29584084 |
T |
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| Q |
107 |
atttgtggtgtgcatgtagagatgcagatttagttcaaagaattggagctgcaacatcacttgaacttagagcaagtggaactcactatacttgtgctcc |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
29584083 |
atttgtggtgtgcatgtagagatgcagatttagttcaaagaattggagctgcaatatcacttgaacttagagcaagtagaactcactatacttgtgctcc |
29583984 |
T |
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| Q |
207 |
ttgtgtggctgtaaggcatcataaccaacttatgaatttgctacgctgattaactacagcttt |
269 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
29583983 |
ttgtgtggctgtaaggcatcataaccaacttctgaatttgctacgttgattaactacagcttt |
29583921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 278 - 471
Target Start/End: Complemental strand, 29583810 - 29583617
Alignment:
| Q |
278 |
gtgagaaatatcccttaccttacaaaccgatattgtgaggttgagttaggtccaaaccaaaatttaagataatattagagttcattcgtaatgacacttg |
377 |
Q |
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| T |
29583810 |
gtgagaaatatcccttaccttacaaaccgatattgtgaggttgagttaggtccaaaccaaaatttaagataatattagagttcattcgtaatgacacttg |
29583711 |
T |
|
| Q |
378 |
gattatgctccagattttccatccttggcatctctaggtttatagtgatactcactcaactcattcgcaaaaagggatgtacactctttctatg |
471 |
Q |
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| T |
29583710 |
gattatgctccagattttccatccttggcatctctaggtttatagtgatactcactcaactcattcgcaaaaagggatgtacactctttctatg |
29583617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 121 - 224
Target Start/End: Original strand, 29610626 - 29610729
Alignment:
| Q |
121 |
tgtagagatgcagatttagttcaaagaattggagctgcaacatcacttgaacttagagcaagtggaactcactatacttgtgctccttgtgtggctgtaa |
220 |
Q |
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||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||| || ||| |||| |||||| |
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| T |
29610626 |
tgtagagatgcagatttagttcaaaaaattgcagctgcaacgtcacttgaacttagagcaagtggaactcactatactttagcccctagtgtatctgtaa |
29610725 |
T |
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| Q |
221 |
ggca |
224 |
Q |
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|||| |
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| T |
29610726 |
ggca |
29610729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 123 - 225
Target Start/End: Complemental strand, 25128882 - 25128780
Alignment:
| Q |
123 |
tagagatgcagatttagttcaaagaattggagctgcaacatcacttgaacttagagcaagtggaactcactatacttgtgctccttgtgtggctgtaagg |
222 |
Q |
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||||||||| ||||||||| |||||||||||||||||| | |||||| ||| |||||| |||| |||||||| | |||||||||||| || |||||| |
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| T |
25128882 |
tagagatgctgatttagttagaagaattggagctgcaacggcgcttgaagttaaagcaagcggaattcactataactttgctccttgtgtcgcggtaagg |
25128783 |
T |
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| Q |
223 |
cat |
225 |
Q |
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||| |
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| T |
25128782 |
cat |
25128780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 294 - 346
Target Start/End: Complemental strand, 19809995 - 19809943
Alignment:
| Q |
294 |
accttacaaaccgatattgtgaggttgagttaggtccaaaccaaaatttaaga |
346 |
Q |
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||||||||| ||||| |||| ||||||||||||| |||| ||||||||||||| |
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| T |
19809995 |
accttacaagccgattttgtaaggttgagttaggcccaacccaaaatttaaga |
19809943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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