View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_151 (Length: 340)
Name: NF10145A_low_151
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_151 |
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Alignment Details
Target: chr3 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 15 - 193
Target Start/End: Original strand, 21794024 - 21794203
Alignment:
| Q |
15 |
atggacatcaccgaattttgagctattgttctctttatttaacaaactttcaccttgagttcattaagagacaagtgaatgaggttaa-cacaaatcaac |
113 |
Q |
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| T |
21794024 |
atggacatcaccgaattttgagctattgttctctttatttaacaaactttcatgttgagttcattaagagacaagtcaataaggttaaccacaaatcagt |
21794123 |
T |
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| Q |
114 |
ataggcagccacatccttacttagcttctatatctttgatgatgtaccgacgtgtataaatgatttaattgctaatgaaa |
193 |
Q |
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| T |
21794124 |
ataggcagacaaatccttacctagcttctatatcttggatgatgtaccgacgtgtataaataatttaattgctaatgaaa |
21794203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 241 - 340
Target Start/End: Original strand, 21794206 - 21794308
Alignment:
| Q |
241 |
tgataatgtcatagtga---ccaatttaattgatataactcggtctatatctaaacacttcacgaaaatcaacacaatgcactatccaaagaattcacct |
337 |
Q |
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| T |
21794206 |
tgataatgtcatggtgatcaccaatttaattgatataactcggtctatatctaaacacttcacgaaaatcaacacaatgcactatccaaagaattcacct |
21794305 |
T |
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| Q |
338 |
tga |
340 |
Q |
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| T |
21794306 |
tga |
21794308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 194
Target Start/End: Complemental strand, 9834630 - 9834473
Alignment:
| Q |
38 |
tattgttctctttatttaacaaactttcaccttgagttcattaagagacaagtgaatgaggttaac-acaaatcaacataggcagccacatccttactta |
136 |
Q |
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| T |
9834630 |
tattgttctctttatttaacaaactctcgtgttgggtttactagaagacaagcgaacgaggttgtccacgaattaacaaatgcatccacgtctttactta |
9834531 |
T |
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| Q |
137 |
gcttctatatctttgatgatgtaccgacgtgtataaatgatttaattgctaatgaaat |
194 |
Q |
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| T |
9834530 |
gctcccgtatttttgatgatttaccgacatgtataaataatttgattgctaatgaaat |
9834473 |
T |
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