View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_158 (Length: 334)

Name: NF10145A_low_158
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_158
NF10145A_low_158
[»] chr7 (1 HSPs)
chr7 (23-334)||(7752747-7753058)


Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 23 - 334
Target Start/End: Original strand, 7752747 - 7753058
Alignment:
Q  23 ttgtccacctcgactttagcttggacagtctcaccggcccaatccctgatttcttaggtcaactcaagaacctcgatgtcatcgacctctccgggaacag 122  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  7752747 ttgttcacctcgactttagcttggacagtctcacaggcccaatccctgatttcttaggtcaactcaagaacctcgatgtcatcgacctctctgggaacag 7752846  T
Q  123 gtttaccggccaaatccctgcatcactaggtcgactcactaagcttagaagcgctaaccttggctcaaaccaactctccggcccaatcccagcctcctta 222  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7752847 gtttaccggccaaatccctgcatcactaggtcgactcaccaagcttagaagcgctaaccttggctcaaaccaactctccggcccaatcccagcctcctta 7752946  T
Q  223 ggcatgatcaagagcctagaacaactctacatatacattaacaacttatctggcccaattccagcttctttagctcaacttcctaaactcaacgaacttt 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7752947 ggcatgatcaagagcctagaacaactctacatatacattaacaacttatctggcccaattccagcttctttagctcaacttcctaaactcaacgaacttt 7753046  T
Q  323 ccctatttcaaa 334  Q
    ||||||||||||    
T  7753047 ccctatttcaaa 7753058  T

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