View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_159 (Length: 334)
Name: NF10145A_low_159
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_159 |
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Alignment Details
Target: chr6 (Bit Score: 161; Significance: 8e-86; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 9 - 177
Target Start/End: Complemental strand, 11530629 - 11530461
Alignment:
| Q |
9 |
tggtgttgtaggagtttatcgtgttttattgctgtctcgattaaatcctcatacaaggtgttggaatgtttgttggttttggatgcgaggaggagtgtat |
108 |
Q |
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| T |
11530629 |
tggtgttgtaggagtttgtcgtgttttattgctgtctcgattaaatcctcatacaaggtgttggaaagtttgttggttttggatgcgaggaggagtgtat |
11530530 |
T |
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| Q |
109 |
tggaggaaaaaatgttccggaatttatcgaaaagcctagctgcgtctatggtgttttatttctgtctga |
177 |
Q |
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| T |
11530529 |
tggaggaaaaaatgttccggaatttatcgaaaagcctagctgcgtctatggtgttttatttctgtctga |
11530461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 9 - 177
Target Start/End: Complemental strand, 11556126 - 11555958
Alignment:
| Q |
9 |
tggtgttgtaggagtttatcgtgttttattgctgtctcgattaaatcctcatacaaggtgttggaatgtttgttggttttggatgcgaggaggagtgtat |
108 |
Q |
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| T |
11556126 |
tggtgttgtaggagtttgtcgtgttttattgctgtctcgattaaatcgtcatacaaggtgttggaaagtttgttggttttggatgcgaggaggagtgtat |
11556027 |
T |
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| Q |
109 |
tggaggaaaaaatgttccggaatttatcgaaaagcctagctgcgtctatggtgttttatttctgtctga |
177 |
Q |
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| T |
11556026 |
tggaggaaaaaatgttccggaatttatcgaaaagcctagctgcgtctatggtgttttatttctgtctga |
11555958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 261 - 334
Target Start/End: Complemental strand, 11555891 - 11555818
Alignment:
| Q |
261 |
caagtgactgtaaattatggtactatcataacttactaaccttttcatttcccaagcatcctttcgatatgtga |
334 |
Q |
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| T |
11555891 |
caagtgactgtaaattatagtactatcataacttactaaccttttcatttcccaagcatcctttcgatatgtga |
11555818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 11530213 - 11530172
Alignment:
| Q |
293 |
ttactaaccttttcatttcccaagcatcctttcgatatgtga |
334 |
Q |
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| T |
11530213 |
ttactaaccttttcatttcccaagcatcctttcgatatgtga |
11530172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 81
Target Start/End: Complemental strand, 11556559 - 11556521
Alignment:
| Q |
43 |
tctcgattaaatcctcatacaaggtgttggaatgtttgt |
81 |
Q |
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| T |
11556559 |
tctcgattaaatcgtcatacaaggtgttggaaggtttgt |
11556521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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