View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_16 (Length: 463)

Name: NF10145A_low_16
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_16
NF10145A_low_16
[»] chr5 (1 HSPs)
chr5 (216-281)||(8837501-8837565)
[»] chr4 (6 HSPs)
chr4 (72-271)||(45088717-45088913)
chr4 (222-268)||(44642825-44642871)
chr4 (3-53)||(44668633-44668683)
chr4 (3-53)||(44687909-44687959)
chr4 (396-429)||(45094985-45095018)
chr4 (3-32)||(45095432-45095461)
[»] chr8 (3 HSPs)
chr8 (214-257)||(42694632-42694675)
chr8 (388-434)||(42694841-42694887)
chr8 (214-255)||(42700277-42700318)
[»] chr1 (7 HSPs)
chr1 (3-36)||(43986172-43986205)
chr1 (3-34)||(43983365-43983396)
chr1 (3-50)||(44004750-44004797)
chr1 (3-41)||(19567332-19567370)
chr1 (282-331)||(43908814-43908863)
chr1 (282-322)||(43902482-43902522)
chr1 (217-281)||(43908726-43908789)
[»] chr7 (2 HSPs)
chr7 (387-435)||(9798398-9798446)
chr7 (3-36)||(41688793-41688826)
[»] chr2 (1 HSPs)
chr2 (4-49)||(24002368-24002413)


Alignment Details
Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 216 - 281
Target Start/End: Complemental strand, 8837565 - 8837501
Alignment:
Q  216 taccatgagagtctggtatcgccgcaatggtaaaccatatcttgtattgttatttttcagtaacat 281  Q
    ||||||||||||||| ||||||||||||| |||| ||||| |||||||||||||||||||||||||    
T  8837565 taccatgagagtctgctatcgccgcaatgctaaatcatat-ttgtattgttatttttcagtaacat 8837501  T

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Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 72 - 271
Target Start/End: Complemental strand, 45088913 - 45088717
Alignment:
Q  72 gatgccttgttcatttcagaaaacggtgtccttctgctgagaaacaagaataattccgaacttattgtgtataatttgaatgatgatggtggactggact 171  Q
    ||||||||||||||||| ||||||||||| ||||||||||||  ||||  |   ||| ||||| |||||||||| || ||  || ||||| |  || | |    
T  45088913 gatgccttgttcatttctgaaaacggtgttcttctgctgagacccaagctt---tccaaacttgttgtgtataacttaaaaaataatggtagtttgcatt 45088817  T
Q  172 attgcagtaagatttttggcgcatttgggcgtgatccacttgtttaccatgagagtctggtatcgccgcaatggtaaaccatatcttgtattgttatttt 271  Q
    || | |||| || |||||||  ||||| |  ||||| || | |||| || |||||||||||||| ||||||||||||| ||||| |||||||||||||||    
T  45088816 atcgtagtacgaattttggcaaatttgcgtttgatctacatatttatcacgagagtctggtatcaccgcaatggtaaatcatatattgtattgttatttt 45088717  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 268
Target Start/End: Complemental strand, 44642871 - 44642825
Alignment:
Q  222 gagagtctggtatcgccgcaatggtaaaccatatcttgtattgttat 268  Q
    |||||||||||||| ||||||||||||| ||||| || |||||||||    
T  44642871 gagagtctggtatcaccgcaatggtaaatcatatattctattgttat 44642825  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 44668683 - 44668633
Alignment:
Q  3 gagtatggagttgttgagtcatggactaaattgacaatcttccctcaggat 53  Q
    |||||||||||||||||||||||||||||| |||  ||| |||| ||||||    
T  44668683 gagtatggagttgttgagtcatggactaaactgatgatcatcccacaggat 44668633  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 44687959 - 44687909
Alignment:
Q  3 gagtatggagttgttgagtcatggactaaattgacaatcttccctcaggat 53  Q
    |||||||||||||||||||||||||||||| |||  ||| |||| ||||||    
T  44687959 gagtatggagttgttgagtcatggactaaactgatgatcatcccacaggat 44687909  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 429
Target Start/End: Complemental strand, 45095018 - 45094985
Alignment:
Q  396 tttgcatttacacttgcaagagtaatttgtctgt 429  Q
    ||||||| ||||||||||||||||||||||||||    
T  45095018 tttgcatctacacttgcaagagtaatttgtctgt 45094985  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 32
Target Start/End: Complemental strand, 45095461 - 45095432
Alignment:
Q  3 gagtatggagttgttgagtcatggactaaa 32  Q
    ||||||||||||||||||||||||||||||    
T  45095461 gagtatggagttgttgagtcatggactaaa 45095432  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 214 - 257
Target Start/End: Original strand, 42694632 - 42694675
Alignment:
Q  214 tttaccatgagagtctggtatcgccgcaatggtaaaccatatct 257  Q
    |||||||||||||||||||||| ||||||||||||| |||||||    
T  42694632 tttaccatgagagtctggtatcaccgcaatggtaaatcatatct 42694675  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 388 - 434
Target Start/End: Original strand, 42694841 - 42694887
Alignment:
Q  388 actcactatttgcatttacacttgcaagagtaatttgtctgtctatg 434  Q
    |||||| |||| ||| ||||||||||||||| |||||||||||||||    
T  42694841 actcacaattttcatctacacttgcaagagttatttgtctgtctatg 42694887  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 42700277 - 42700318
Alignment:
Q  214 tttaccatgagagtctggtatcgccgcaatggtaaaccatat 255  Q
    |||| |||||||||||| |||||||||||||||||| |||||    
T  42700277 tttagcatgagagtctgctatcgccgcaatggtaaatcatat 42700318  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 43986205 - 43986172
Alignment:
Q  3 gagtatggagttgttgagtcatggactaaattga 36  Q
    ||||||||||||||||||||||||||||||||||    
T  43986205 gagtatggagttgttgagtcatggactaaattga 43986172  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 34
Target Start/End: Complemental strand, 43983396 - 43983365
Alignment:
Q  3 gagtatggagttgttgagtcatggactaaatt 34  Q
    ||||||||||||||||||||||||||||||||    
T  43983396 gagtatggagttgttgagtcatggactaaatt 43983365  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 44004797 - 44004750
Alignment:
Q  3 gagtatggagttgttgagtcatggactaaattgacaatcttccctcag 50  Q
    ||||||||||||| ||||||||||||||||||||  ||| ||||||||    
T  44004797 gagtatggagttgctgagtcatggactaaattgatgatcatccctcag 44004750  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 41
Target Start/End: Complemental strand, 19567370 - 19567332
Alignment:
Q  3 gagtatggagttgttgagtcatggactaaattgacaatc 41  Q
    ||||||||||||| |||||||||||||| ||||||||||    
T  19567370 gagtatggagttgctgagtcatggactatattgacaatc 19567332  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 331
Target Start/End: Original strand, 43908814 - 43908863
Alignment:
Q  282 attcaattaatgtttgttgtcatcttctttttattccattttattcagaa 331  Q
    |||||||||||||||||||| ||||| ||||||||  |||||||| ||||    
T  43908814 attcaattaatgtttgttgtgatcttatttttattttattttatttagaa 43908863  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 322
Target Start/End: Original strand, 43902482 - 43902522
Alignment:
Q  282 attcaattaatgtttgttgtcatcttctttttattccattt 322  Q
    |||||||||||||||||||| ||||| ||||||||| ||||    
T  43902482 attcaattaatgtttgttgtgatcttgtttttattctattt 43902522  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 281
Target Start/End: Original strand, 43908726 - 43908789
Alignment:
Q  217 accatgagagtctggtatcgccgcaatggtaaaccatatcttgtattgttatttttcagtaacat 281  Q
    ||||||||||||| ||||| | ||| ||||||| |||||||| ||||||| ||||||| ||||||    
T  43908726 accatgagagtctagtatcacagcagtggtaaatcatatcttatattgtt-tttttcactaacat 43908789  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 435
Target Start/End: Complemental strand, 9798446 - 9798398
Alignment:
Q  387 cactcactatttgcatttacacttgcaagagtaatttgtctgtctatgt 435  Q
    |||||||||||| ||| ||||||||||||| ||||||||||||| ||||    
T  9798446 cactcactattttcatctacacttgcaagattaatttgtctgtccatgt 9798398  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 41688826 - 41688793
Alignment:
Q  3 gagtatggagttgttgagtcatggactaaattga 36  Q
    |||||| |||||||||||||||||||||||||||    
T  41688826 gagtatagagttgttgagtcatggactaaattga 41688793  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 24002368 - 24002413
Alignment:
Q  4 agtatggagttgttgagtcatggactaaattgacaatcttccctca 49  Q
    |||| |||||||||||||||||||| ||||||| |||| |||||||    
T  24002368 agtacggagttgttgagtcatggacaaaattgaaaatcatccctca 24002413  T

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