View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_165 (Length: 330)
Name: NF10145A_low_165
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_165 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 16 - 330
Target Start/End: Original strand, 45383826 - 45384140
Alignment:
| Q |
16 |
tgaagctacctcattgtaagaatacttttcattttatgcgctcttgttttaaatccttcataaagctataaaatattttatacgttgtaaatccttcatt |
115 |
Q |
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| T |
45383826 |
tgaagctgcctcattataagaatacttttcattttatgcgctcttgttttaaatccttcataaaactataaaatattttatacgttgtaaatccttcatt |
45383925 |
T |
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| Q |
116 |
tttggtggagttttgatcttcactcctctcttccattnnnnnnnnnnnnnnnnncaattagtttaaaataatttctctcctcgttgttttgggttgttta |
215 |
Q |
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| T |
45383926 |
tttggtggagttttgatcttcactcctctcttccatcaaaaaatttgaaaaaaacaattagtttaaaataatttctctcctcgttgttttgggttgttta |
45384025 |
T |
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| Q |
216 |
taaagctactataattcaaaaccaaacagttaaaatacaatcaagattggattagttttcgttttaaaaacggtggtcaaagtacacaacgagcaatttt |
315 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45384026 |
taaagctacgataattcaaaaccaaacagttaaaatacaatcaagattggattagttttcgttttaaaaacggtggtcaaagtacacaacgagcaatttt |
45384125 |
T |
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| Q |
316 |
catttataaacctga |
330 |
Q |
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||||||||||||||| |
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| T |
45384126 |
catttataaacctga |
45384140 |
T |
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