View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_166 (Length: 330)
Name: NF10145A_low_166
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_166 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 7 - 330
Target Start/End: Complemental strand, 39616558 - 39616233
Alignment:
| Q |
7 |
tttcgtgttcgggtcgtgggaaaggtatatagctccacaattagaagtggatatatagcccagaagcttaaagttgtcaagcttgtg--agctttatatc |
104 |
Q |
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| T |
39616558 |
tttcatgttcgggtcgtgggaaaggtatatagctccacaattagaagttgatatatagcccagaagcttaaagctgttaagcttgtgtgagctttatatc |
39616459 |
T |
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| Q |
105 |
c-acttaggttcttctacggctcatctatgttttgttttctttcggaattttgtagagtccctgaataacttgtgtatatatgtatgatgttgttgaata |
203 |
Q |
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| T |
39616458 |
ccacttaggttcttctacggctcttctctgttttgttttctttcggaattttgtagagtccctgaataacttgtgtatatatgtatgatgttgttgaata |
39616359 |
T |
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| Q |
204 |
ttgtaatcaaattttgtagctgattttgttacttgcttcatagatattctaaaatggtctttgacaatgcacataattgatcaagtaaagttaaattcgt |
303 |
Q |
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| T |
39616358 |
ttgtaatcaaattttgtagctgattttgttacttgcttcatagatattctaaaatggtctttgacaatgcacaacattgatcaagtaaagttaaatt-gt |
39616260 |
T |
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| Q |
304 |
taacattttagtatactttatgtgtga |
330 |
Q |
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| T |
39616259 |
taacattttagtatactttatgtgtga |
39616233 |
T |
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