View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_168 (Length: 328)

Name: NF10145A_low_168
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_168
NF10145A_low_168
[»] chr7 (8 HSPs)
chr7 (148-328)||(19216898-19217078)
chr7 (150-328)||(41256156-41256334)
chr7 (12-140)||(19217144-19217272)
chr7 (7-135)||(41255955-41256083)
chr7 (148-328)||(15891755-15891923)
chr7 (14-140)||(15891989-15892115)
chr7 (38-108)||(25010997-25011067)
chr7 (152-232)||(25011169-25011249)
[»] chr1 (8 HSPs)
chr1 (148-328)||(50516659-50516837)
chr1 (148-328)||(33803090-33803270)
chr1 (148-328)||(44711783-44711963)
chr1 (7-140)||(50516905-50517038)
chr1 (7-140)||(33803336-33803469)
chr1 (7-140)||(44711584-44711717)
chr1 (12-140)||(45909347-45909475)
chr1 (30-109)||(10549314-10549393)
[»] chr8 (7 HSPs)
chr8 (148-328)||(9139253-9139433)
chr8 (148-310)||(23254524-23254686)
chr8 (148-328)||(755418-755598)
chr8 (148-328)||(23709217-23709398)
chr8 (7-140)||(9139054-9139187)
chr8 (12-140)||(23254752-23254880)
chr8 (14-140)||(755664-755784)
[»] chr5 (8 HSPs)
chr5 (148-328)||(20235344-20235524)
chr5 (148-328)||(34832613-34832793)
chr5 (7-140)||(20235145-20235278)
chr5 (7-129)||(25761720-25761842)
chr5 (12-135)||(34832419-34832542)
chr5 (14-140)||(38966535-38966661)
chr5 (149-291)||(31049121-31049263)
chr5 (149-291)||(31044466-31044608)
[»] chr2 (13 HSPs)
chr2 (148-328)||(17311190-17311370)
chr2 (148-328)||(38621246-38621426)
chr2 (148-326)||(30213249-30213427)
chr2 (148-328)||(23937670-23937850)
chr2 (7-140)||(30213493-30213626)
chr2 (12-140)||(29809921-29810049)
chr2 (7-135)||(17310991-17311119)
chr2 (7-139)||(38621493-38621625)
chr2 (229-328)||(29809714-29809813)
chr2 (30-140)||(10925749-10925859)
chr2 (47-140)||(23937510-23937603)
chr2 (160-291)||(10925540-10925671)
chr2 (148-187)||(29809816-29809855)
[»] chr3 (4 HSPs)
chr3 (148-328)||(52971133-52971313)
chr3 (151-328)||(6160744-6160921)
chr3 (7-140)||(52970934-52971067)
chr3 (12-99)||(48094747-48094834)
[»] chr6 (1 HSPs)
chr6 (166-270)||(24131885-24131989)


Alignment Details
Target: chr7 (Bit Score: 149; Significance: 1e-78; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 148 - 328
Target Start/End: Complemental strand, 19217078 - 19216898
Alignment:
Q  148 tccaaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcgg 247  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||| ||||||||||||||    
T  19217078 tccaaaattgtcttttcaacatattccaaaaacttgggaaattttgcgcatagaactttgaatcgggtccaattatcaatgtatgcttcctccgtttcgg 19216979  T
Q  248 agtccacaatatccacccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgcttacccattcttgcctttga 328  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  19216978 agtccacaatatccatccatgcagccatcacagtcttcaccaccgaaccaggcttaatcgctttcccattcttgcctttga 19216898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 150 - 328
Target Start/End: Original strand, 41256156 - 41256334
Alignment:
Q  150 caaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcggag 249  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||| ||||||    
T  41256156 caaaattgtcttttcaacatattccaaaaacttggaaaattttgcgcatagaactttaaaccgggtccaattatcaatatatgtttcctccgtgtcggag 41256255  T
Q  250 tccacaatatccacccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgcttacccattcttgcctttga 328  Q
    |||||||||| || |||||||||||||||| | ||||||||||| |||||||||||||||| |||||||||||||||||    
T  41256256 tccacaatatacatccatgcagccatcacaattttcaccaccgacgcaggcttaatcgcttgcccattcttgcctttga 41256334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 12 - 140
Target Start/End: Complemental strand, 19217272 - 19217144
Alignment:
Q  12 atgaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttttcga 111  Q
    ||||||||| ||||||  |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||| |||||||||| |    
T  19217272 atgaagcatttattgcggtatgttgcaactctagcatgttatgaacggattgccagtttgtactcaaatcacccatactactactcaaatactttttcaa 19217173  T
Q  112 ctgagcgtgtgcagattcagctctgtttg 140  Q
    | || |||||||||||||| |||||||||    
T  19217172 ccgaacgtgtgcagattcaactctgtttg 19217144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 7 - 135
Target Start/End: Original strand, 41255955 - 41256083
Alignment:
Q  7 ctgagatgaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatacttt 106  Q
    |||| ||||||||||||||||  |||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||| ||||||||||| ||||||    
T  41255955 ctgaaatgaagcatgtattgcggtatgttgcaactctagcatgttattaacggattgccagtttgtactcaaatcacccatactactactcaggtacttt 41256054  T
Q  107 ttcgactgagcgtgtgcagattcagctct 135  Q
    ||  ||  |||||||||||||||||||||    
T  41256055 ttaaacgaagcgtgtgcagattcagctct 41256083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 148 - 328
Target Start/End: Complemental strand, 15891923 - 15891755
Alignment:
Q  148 tccaaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcgg 247  Q
    |||||||||||||||| |||||| ||||||||||| || ||||||||||||| ||||||||||||||||||| |||||||||| | ||||||| |||||     
T  15891923 tccaaaattgtcttttcaacataatccaaaaacttagggaattttgcgcatacaactttgaaccgggtccaattatcaatatacgcttcctccatttcga 15891824  T
Q  248 agtccacaatatccacccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgcttacccattcttgcctttga 328  Q
    ||| ||||||||            |||||||||||||||| ||| |||||||||| ||||||| |||||||||||||||||    
T  15891823 agtgcacaatat------------ccatcacagtcttcacaaccaaagcaggcttgatcgcttccccattcttgcctttga 15891755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 14 - 140
Target Start/End: Complemental strand, 15892115 - 15891989
Alignment:
Q  14 gaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttttcgact 113  Q
    ||||||||||||||  ||||||||||||||||||| | |||||||||||  ||||||||||| |||| |||||| ||||||||||||||||||||| ||     
T  15892115 gaagcatgtattgcggtatgttgcaactctagcatctcatgaacggatttccagtttgtacttaaatcacccatactactactcagatactttttcaacc 15892016  T
Q  114 gagcgtgtgcagattcagctctgtttg 140  Q
     |||||||| |||||||  ||||||||    
T  15892015 tagcgtgtgtagattcaattctgtttg 15891989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 108
Target Start/End: Original strand, 25010997 - 25011067
Alignment:
Q  38 aactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatacttttt 108  Q
    ||||||| |||||| ||||| ||||  ||||||||||| |||| || ||| |||||| |||||||||||||    
T  25010997 aactctaacatgttgtgaacagatttccagtttgtacttaaattactcatactactaatcagatacttttt 25011067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 232
Target Start/End: Original strand, 25011169 - 25011249
Alignment:
Q  152 aaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatg 232  Q
    |||||||  ||| |||||||||||||||| | ||||| ||  |||||| | ||||||||||| | ||| ||||||||||||    
T  25011169 aaattgtagtttcaacatattccaaaaacataggaaacttgtcgcatacagctttgaaccggttgcaattatcaatatatg 25011249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 142; Significance: 2e-74; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 148 - 328
Target Start/End: Complemental strand, 50516837 - 50516659
Alignment:
Q  148 tccaaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcgg 247  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||| ||||||||| ||||    
T  50516837 tccaaaattgtcttttcaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaattat--atatatgcttcctccgtgtcgg 50516740  T
Q  248 agtccacaatatccacccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgcttacccattcttgcctttga 328  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  50516739 agtccacaatatccatccatgcagccatcacagtcttcaccaccgacgcaggcttaatcgcttgcccattcttgcctttga 50516659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 148 - 328
Target Start/End: Complemental strand, 33803270 - 33803090
Alignment:
Q  148 tccaaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcgg 247  Q
    |||||||||||||||| ||||||||||||||| |||| |||||||| ||||||||||||||||||||||||| ||||||| |||| ||||||||||||||    
T  33803270 tccaaaattgtcttttcaacatattccaaaaatttggaaaattttgtgcatagaactttgaaccgggtccaattatcaatgtatgcttcctccgtttcgg 33803171  T
Q  248 agtccacaatatccacccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgcttacccattcttgcctttga 328  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||    
T  33803170 agtccacaatatccatccatgcagccatcacaatcttcaccaccgaaccaggcttaatcgcttgcccattcttgcctttga 33803090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 148 - 328
Target Start/End: Original strand, 44711783 - 44711963
Alignment:
Q  148 tccaaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcgg 247  Q
    |||||||||||||||| ||||||||||||||| | || |||||||||| ||||||||||||| ||||||||| |||||||||||| ||||||||| ||||    
T  44711783 tccaaaattgtcttttcaacatattccaaaaattaggtaaattttgcgtatagaactttgaatcgggtccaattatcaatatatgcttcctccgtgtcgg 44711882  T
Q  248 agtccacaatatccacccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgcttacccattcttgcctttga 328  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  44711883 agtccacaatatccgtccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgcttgcccattcttgcctttga 44711963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 7 - 140
Target Start/End: Complemental strand, 50517038 - 50516905
Alignment:
Q  7 ctgagatgaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatacttt 106  Q
    |||| ||||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||| ||||||    
T  50517038 ctgaaatgaagcatgtattgcggtatgttgcaactctagcatgttatgaacggattgccagtttgtactcaaatcacccatactactactcaggtacttt 50516939  T
Q  107 ttcgactgagcgtgtgcagattcagctctgtttg 140  Q
    ||| || || ||||||||||||||||| ||||||    
T  50516938 ttcaaccgatcgtgtgcagattcagctatgtttg 50516905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 7 - 140
Target Start/End: Complemental strand, 33803469 - 33803336
Alignment:
Q  7 ctgagatgaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatacttt 106  Q
    |||| ||||||||||||||||  |||||||||||||||||||||||||||| ||||  |||||| ||||||||| |||||| |||||||||| | |||||    
T  33803469 ctgaaatgaagcatgtattgcggtatgttgcaactctagcatgttatgaacagatttccagtttttactcaaatcacccatactactactcaaacacttt 33803370  T
Q  107 ttcgactgagcgtgtgcagattcagctctgtttg 140  Q
    ||| || ||||||| |||||||||||||||||||    
T  33803369 ttcaaccgagcgtgcgcagattcagctctgtttg 33803336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 7 - 140
Target Start/End: Original strand, 44711584 - 44711717
Alignment:
Q  7 ctgagatgaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatacttt 106  Q
    |||| |||||||||||||||   |||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||| ||||||||||| ||||||    
T  44711584 ctgaaatgaagcatgtattgtggtatgttgcaactctagcatgttattaacggattgccagtttgtactcaaattacccatactactactcaggtacttt 44711683  T
Q  107 ttcgactgagcgtgtgcagattcagctctgtttg 140  Q
    ||| || ||||| ||||||||||| || ||||||    
T  44711684 ttcaaccgagcgagtgcagattcaactttgtttg 44711717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 12 - 140
Target Start/End: Original strand, 45909347 - 45909475
Alignment:
Q  12 atgaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttttcga 111  Q
    ||||| |||||| |||  |||||||||||||||||||||||| ||| ||||| |||||||||||||||| |||||| ||||||||||| ||| ||||| |    
T  45909347 atgaaacatgtactgcggtatgttgcaactctagcatgttattaacagattgccagtttgtactcaaatcacccatactactactcaggtaccttttcaa 45909446  T
Q  112 ctgagcgtgtgcagattcagctctgtttg 140  Q
    | |||||||||||||||||||||||||||    
T  45909447 ccgagcgtgtgcagattcagctctgtttg 45909475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 109
Target Start/End: Complemental strand, 10549393 - 10549314
Alignment:
Q  30 tatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttttc 109  Q
    ||||||| | |||||||||||| ||||||||||  ||||||||||| |||| || ||| |||||| |||||| |||||||    
T  10549393 tatgttgtagctctagcatgttgtgaacggattcccagtttgtacttaaatcactcatactactagtcagatgctttttc 10549314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 137; Significance: 2e-71; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 148 - 328
Target Start/End: Original strand, 9139253 - 9139433
Alignment:
Q  148 tccaaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcgg 247  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||  |||||| |||| ||||||||||||||    
T  9139253 tccaaaattgtcttttcaacatattccaaaaacttggaaaattttgcgcatagaactttgaaccgagtccaatcatcaatgtatgcttcctccgtttcgg 9139352  T
Q  248 agtccacaatatccacccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgcttacccattcttgcctttga 328  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  9139353 agtccacaatatctatccatgcagccatcacagtcttcaccaccgaaccaggcttaatcgctttcccattcttgcctttga 9139433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 148 - 310
Target Start/End: Complemental strand, 23254686 - 23254524
Alignment:
Q  148 tccaaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcgg 247  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||| ||||||    
T  23254686 tccaaaattatcttttcaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaattatcaatgtatgcttcctccttttcgg 23254587  T
Q  248 agtccacaatatccacccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgctt 310  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||    
T  23254586 agtccacaatatccatccatgcagccgtcacagtcttcaccaccgaaccaggcttaatcgctt 23254524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 148 - 328
Target Start/End: Complemental strand, 755598 - 755418
Alignment:
Q  148 tccaaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcgg 247  Q
    |||||||||||||||| |||||| |||| |||||| |||||||||||||||| | |||||||||| |||||| |||||||||||| ||||||||||||||    
T  755598 tccaaaattgtcttttcaacataatccagaaacttaggaaattttgcgcatacatctttgaaccgagtccaattatcaatatatgcttcctccgtttcgg 755499  T
Q  248 agtccacaatatccacccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgcttacccattcttgcctttga 328  Q
    ||||||||||||||| |||  ||||||||||| | ||||||||||||||||||||||||| || |||||| ||||||||||    
T  755498 agtccacaatatccaaccagacagccatcacaattttcaccaccgaagcaggcttaatcgattccccattattgcctttga 755418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 148 - 328
Target Start/End: Original strand, 23709217 - 23709398
Alignment:
Q  148 tccaaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcgg 247  Q
    ||||| |||||||||| || ||| ||||||||||| ||||||||  |||||| |||||||||    |||||| |||||||||||| ||||||||||||||    
T  23709217 tccaacattgtcttttcaaaataatccaaaaacttaggaaatttcccgcatacaactttgaattttgtccaattatcaatatatgcttcctccgtttcgg 23709316  T
Q  248 agtccacaatatccacccatgcagccatcacagtcttca-ccaccgaagcaggcttaatcgcttacccattcttgcctttga 328  Q
    | ||| ||||||||| ||||||||||||||||||||||| |||| || |||||||| ||||||| |||||||||||||||||    
T  23709317 actcctcaatatccatccatgcagccatcacagtcttcacccacagaggcaggcttgatcgcttccccattcttgcctttga 23709398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 7 - 140
Target Start/End: Original strand, 9139054 - 9139187
Alignment:
Q  7 ctgagatgaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatacttt 106  Q
    |||| ||||| ||||||||||  |||||||||||||||||||||||||||| ||||| |||||||||||||||| || ||| |||||||||| |||||||    
T  9139054 ctgaaatgaaacatgtattgcggtatgttgcaactctagcatgttatgaacagattgccagtttgtactcaaatcactcatactactactcaaatacttt 9139153  T
Q  107 ttcgactgagcgtgtgcagattcagctctgtttg 140  Q
    ||| |  ||||||||||| ||||| |||||||||    
T  9139154 ttcaatcgagcgtgtgcacattcaactctgtttg 9139187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 140
Target Start/End: Complemental strand, 23254880 - 23254752
Alignment:
Q  12 atgaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttttcga 111  Q
    ||||||||||| ||||  |||| ||||||||||||||||||||||||||||| |||||||||||||||| | | || |||||||||| ||||||| || |    
T  23254880 atgaagcatgttttgcggtatgatgcaactctagcatgttatgaacggattgccagtttgtactcaaatcatctatactactactcaaatactttctcaa 23254781  T
Q  112 ctgagcgtgtgcagattcagctctgtttg 140  Q
      |||||| | ||||||||||||||||||    
T  23254780 tcgagcgtctacagattcagctctgtttg 23254752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 14 - 140
Target Start/End: Complemental strand, 755784 - 755664
Alignment:
Q  14 gaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttttcgact 113  Q
    |||||||||||| |  |||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||      |||| || ||||||||| ||     
T  755784 gaagcatgtattacggtatgttgcaactatagcatgtcatgaacggatttgcagtttgtactcaaataaccca------tacttaggtactttttcaacc 755691  T
Q  114 gagcgtgtgcagattcagctctgtttg 140  Q
    |||||||||||||||||||||| ||||    
T  755690 gagcgtgtgcagattcagctctatttg 755664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 137; Significance: 2e-71; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 148 - 328
Target Start/End: Original strand, 20235344 - 20235524
Alignment:
Q  148 tccaaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcgg 247  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||| || |||||||||||    
T  20235344 tccaaaattgtcttttcaacatattccaaaaacttgggaaattttgcgtatagaactttgaaccgggtccaattatcaatgtatgctttctccgtttcgg 20235443  T
Q  248 agtccacaatatccacccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgcttacccattcttgcctttga 328  Q
    ||||||||||||||| |||||||||||| |||||||||||||| ||| ||||||||||||||| |||||||||||||||||    
T  20235444 agtccacaatatccatccatgcagccatgacagtcttcaccactgaaccaggcttaatcgcttgcccattcttgcctttga 20235524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 148 - 328
Target Start/End: Original strand, 34832613 - 34832793
Alignment:
Q  148 tccaaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcgg 247  Q
    ||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| || ||||    
T  34832613 tccaaaattttcttttcaacatattccaaaaactcgggaaattttgcgcatagaactttgaaccgggtccaattatcaatatatgtttcctctgtgtcgg 34832712  T
Q  248 agtccacaatatccacccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgcttacccattcttgcctttga 328  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||| ||| ||||||| ||||  ||||||||||||||||    
T  34832713 agtccacaatatccatccatgcagccatcacagtctacaccaccgacgcatgcttaattgcttgtccattcttgcctttga 34832793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 7 - 140
Target Start/End: Original strand, 20235145 - 20235278
Alignment:
Q  7 ctgagatgaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatacttt 106  Q
    |||| ||||||||||||||||  |||||| ||||||||| ||||||||||||||||| |||||||||||||||| ||||||  |||||||||  ||||||    
T  20235145 ctgaaatgaagcatgtattgcggtatgtttcaactctagtatgttatgaacggattgccagtttgtactcaaatcacccatattactactcaattacttt 20235244  T
Q  107 ttcgactgagcgtgtgcagattcagctctgtttg 140  Q
    ||| ||||||||||||||||||||||||||||||    
T  20235245 ttcaactgagcgtgtgcagattcagctctgtttg 20235278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 7 - 129
Target Start/End: Complemental strand, 25761842 - 25761720
Alignment:
Q  7 ctgagatgaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatacttt 106  Q
    |||| ||||||||||||||||  ||| ||||||||||| |||||||||||||||||| |||||||||||||||| |||||| ||||||||||| ||||||    
T  25761842 ctgaaatgaagcatgtattgcggtattttgcaactctaccatgttatgaacggattgccagtttgtactcaaatcacccatactactactcaggtacttt 25761743  T
Q  107 ttcgactgagcgtgtgcagattc 129  Q
    ||| || ||||||||||||||||    
T  25761742 ttcaaccgagcgtgtgcagattc 25761720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 12 - 135
Target Start/End: Original strand, 34832419 - 34832542
Alignment:
Q  12 atgaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttttcga 111  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||| ||||||||||  ||||||||| |    
T  34832419 atgaagcatgtattgcggtatgttgcaactctagcatgttatgaacggattgccagtttgtactcaaatctcccatactactactcaagtactttttcaa 34832518  T
Q  112 ctgagcgtgtgcagattcagctct 135  Q
       |||||||| ||||||||||||    
T  34832519 acaagcgtgtgaagattcagctct 34832542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 14 - 140
Target Start/End: Complemental strand, 38966661 - 38966535
Alignment:
Q  14 gaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttttcgact 113  Q
    |||||||||||| |  ||||||||||||||||||||| |||||||| ||  ||||||||||| |||| |||||| ||||||||||||||||||||| ||     
T  38966661 gaagcatgtattacggtatgttgcaactctagcatgtcatgaacggctttccagtttgtactaaaatcacccatactactactcagatactttttcaacc 38966562  T
Q  114 gagcgtgtgcagattcagctctgtttg 140  Q
    ||||||||||| |||||||||| ||||    
T  38966561 gagcgtgtgcatattcagctctatttg 38966535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 149 - 291
Target Start/End: Original strand, 31049121 - 31049263
Alignment:
Q  149 ccaaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcgga 248  Q
    |||||||| | |||| |||||||| || |||||| ||||||||   ||||| ||||||||||||| | ||| |||||| ||||| || ||| || || ||    
T  31049121 ccaaaattttattttcaacatatttcacaaacttaggaaatttgtggcatacaactttgaaccggttgcaattatcaacatatgcttgctctgtatcaga 31049220  T
Q  249 gtccacaatatccacccatgcagccatcacagtcttcaccacc 291  Q
     | ||| |||||| |||||||| |||| || ||||||||||||    
T  31049221 attcacgatatcctcccatgcaaccataaccgtcttcaccacc 31049263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 291
Target Start/End: Original strand, 31044466 - 31044608
Alignment:
Q  149 ccaaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcgga 248  Q
    |||||||| | |||| |||||||| ||||||||| ||||||||   ||||| ||||||||||||| | ||| |||||| ||||| || ||| || ||  |    
T  31044466 ccaaaattatattttcaacatatttcaaaaacttaggaaatttgtggcatacaactttgaaccggttgcaattatcaacatatgcttgctctgtatcaaa 31044565  T
Q  249 gtccacaatatccacccatgcagccatcacagtcttcaccacc 291  Q
     | ||| |||||| |||||||| |||| || || |||||||||    
T  31044566 attcacgatatcctcccatgcaaccataaccgttttcaccacc 31044608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 137; Significance: 2e-71; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 148 - 328
Target Start/End: Original strand, 17311190 - 17311370
Alignment:
Q  148 tccaaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcgg 247  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||| ||||||||||||||    
T  17311190 tccaaaattgtcttttcaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccggttccaattatcaatgtatgcttcctccgtttcgg 17311289  T
Q  248 agtccacaatatccacccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgcttacccattcttgcctttga 328  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||| || ||||||| ||||||    
T  17311290 agtccacaatatccatccatgcatccatcacagtcttcaccaccgaaccaggcttaatcgcttgccaattcttgtctttga 17311370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 148 - 328
Target Start/End: Complemental strand, 38621426 - 38621246
Alignment:
Q  148 tccaaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcgg 247  Q
    |||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||  | ||||    
T  38621426 tccaaaattgtcttttcaacatattcctataacttgggaaattttgcgcatagaactttgaaccgggtccaattatcaatatatgcttcctctatgtcgg 38621327  T
Q  248 agtccacaatatccacccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgcttacccattcttgcctttga 328  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||    
T  38621326 agtccacaatatccatccatgcagccatcacagtcttcaccaccgacgcatgcttaatcgcttgcccattcttgcctttga 38621246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 148 - 326
Target Start/End: Complemental strand, 30213427 - 30213249
Alignment:
Q  148 tccaaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcgg 247  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||| | ||    
T  30213427 tccaaaattgtcttttcaacatattccaaaaacatgggaaattttgcgcatagaactttgaaccgggtccaattatcaatatatgcttcctacgtgttgg 30213328  T
Q  248 agtccacaatatccacccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgcttacccattcttgccttt 326  Q
    |||||||| |||||| |||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||    
T  30213327 agtccacagtatccatccatgcagccatcatagtcttcaccaccgacgcaggcttaatcgcttgcccattcttgccttt 30213249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 148 - 328
Target Start/End: Original strand, 23937670 - 23937850
Alignment:
Q  148 tccaaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcgg 247  Q
    |||||||||||||||| |||||| ||||||||| | | |||||||||||||| |||||||||| |||||||| |||||||||||| ||||||||||||||    
T  23937670 tccaaaattgtcttttcaacataatccaaaaacatagaaaattttgcgcatacaactttgaactgggtccaattatcaatatatgcttcctccgtttcgg 23937769  T
Q  248 agtccacaatatccacccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgcttacccattcttgcctttga 328  Q
    ||||||||||||||| |||||||||||||||| ||||||||||| |||||||||| ||||||| ||| |||||||||||||    
T  23937770 agtccacaatatccaaccatgcagccatcacaatcttcaccaccaaagcaggcttgatcgcttcccccttcttgcctttga 23937850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 7 - 140
Target Start/End: Complemental strand, 30213626 - 30213493
Alignment:
Q  7 ctgagatgaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatacttt 106  Q
    |||| ||||||||||||||||| ||||||||||||||| |||||||||||| ||||| |||||||||||||||| |||||| ||||||||||| ||||||    
T  30213626 ctgaaatgaagcatgtattgcagtatgttgcaactctaccatgttatgaacagattgccagtttgtactcaaatcacccatactactactcaggtacttt 30213527  T
Q  107 ttcgactgagcgtgtgcagattcagctctgtttg 140  Q
    ||| || |||||||||||||||||||||||||||    
T  30213526 ttcaaccgagcgtgtgcagattcagctctgtttg 30213493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 12 - 140
Target Start/End: Complemental strand, 29810049 - 29809921
Alignment:
Q  12 atgaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttttcga 111  Q
    ||||| ||||||||||  |||||||||||| ||||||||||||||||||||  ||||||||||||||||||||||| |||||||||| |||||||||| |    
T  29810049 atgaatcatgtattgcggtatgttgcaactttagcatgttatgaacggatttccagtttgtactcaaatgacccatactactactcaaatactttttcaa 29809950  T
Q  112 ctgagcgtgtgcagattcagctctgtttg 140  Q
    | |||||||||||||||||||||||||||    
T  29809949 cagagcgtgtgcagattcagctctgtttg 29809921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 7 - 135
Target Start/End: Original strand, 17310991 - 17311119
Alignment:
Q  7 ctgagatgaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatacttt 106  Q
    |||| ||||||||||||||||  |||||||||||||||| |||||||||||||||||  ||||||||||||||| |||||| |||||||||| |||||||    
T  17310991 ctgaaatgaagcatgtattgcggtatgttgcaactctagaatgttatgaacggattgctagtttgtactcaaatcacccatactactactcaaatacttt 17311090  T
Q  107 ttcgactgagcgtgtgcagattcagctct 135  Q
    ||| || ||||||||||||||||||||||    
T  17311091 ttcaaccgagcgtgtgcagattcagctct 17311119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 7 - 139
Target Start/End: Complemental strand, 38621625 - 38621493
Alignment:
Q  7 ctgagatgaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatacttt 106  Q
    |||| ||||||||| ||||||  |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||| ||||||    
T  38621625 ctgaaatgaagcatttattgcggtatgttgcaactctagcatgttatgaacggattgccagtttgtactcaaatcacccatactactactcaggtacttt 38621526  T
Q  107 ttcgactgagcgtgtgcagattcagctctgttt 139  Q
     || || ||| ||||||||||||||||||||||    
T  38621525 ctcaaccgagtgtgtgcagattcagctctgttt 38621493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 229 - 328
Target Start/End: Complemental strand, 29809813 - 29809714
Alignment:
Q  229 tatgattcctccgtttcggagtccacaatatccacccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgcttacccattcttgcctttga 328  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||| ||||||||||    
T  29809813 tatgcttcctccgtttcggagtccacaatatccacccatgcagccatcacaatcttcaccaccgaaccaggcttaatcgctttcccatttttgcctttga 29809714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 140
Target Start/End: Complemental strand, 10925859 - 10925749
Alignment:
Q  30 tatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttttcgactgagcgtgtgcagattc 129  Q
    |||||||  ||||||||||||| |||||||| |  ||||||||||| |||| |||||  ||||||  |||||||||||||||| |    ||||||||||     
T  10925859 tatgttgtgactctagcatgttgtgaacggagttccagtttgtacttaaatcacccacactactagccagatactttttcgaccggttatgtgcagattt 10925760  T
Q  130 agctctgtttg 140  Q
    |||||||||||    
T  10925759 agctctgtttg 10925749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 140
Target Start/End: Original strand, 23937510 - 23937603
Alignment:
Q  47 atgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttttcgactgagcgtgtgcagattcagctctgtttg 140  Q
    |||| ||||| |||||| ||||||||||| | || | |||| |||||| |||||||||||||| || ||| ||||||||||||  |||||||||    
T  23937510 atgtcatgaatggattgtcagtttgtacttagatcatccatactactattcagatactttttcaaccgagtgtgtgcagattcgactctgtttg 23937603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 291
Target Start/End: Complemental strand, 10925671 - 10925540
Alignment:
Q  160 ttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcggagtccacaatat 259  Q
    |||| |||||||||||||||||| ||||||||   ||||| |||||||||  || | ||| |||||| ||||| || ||  || ||||| | ||| ||||    
T  10925671 ttttcaacatattccaaaaacttaggaaatttgttgcatacaactttgaataggttgcaattatcaacatatggttgctatgtatcggaattcacgatat 10925572  T
Q  260 ccacccatgcagccatcacagtcttcaccacc 291  Q
    || |||||||| ||| ||| ||||||||||||    
T  10925571 cctcccatgcaaccaccaccgtcttcaccacc 10925540  T

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Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 148 - 187
Target Start/End: Complemental strand, 29809855 - 29809816
Alignment:
Q  148 tccaaaattgtcttttaaacatattccaaaaacttgggaa 187  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  29809855 tccaaaattgtcttttcaacatattccaaaaacttgggaa 29809816  T

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Target: chr3 (Bit Score: 133; Significance: 4e-69; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 148 - 328
Target Start/End: Original strand, 52971133 - 52971313
Alignment:
Q  148 tccaaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcgg 247  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||  ||||||||||| ||    
T  52971133 tccaaaattgtcttttcaacatatttcaaaaacttgggaaattttgcgcatataactttgaaccgggtccaattatcaatgtatacttcctccgttttgg 52971232  T
Q  248 agtccacaatatccacccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgcttacccattcttgcctttga 328  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| | |||||||||||||||    
T  52971233 agtccacaatatccacccatgcagccatcatagtcttcaccaccgaaccaggcttaatcgctttctcattcttgcctttga 52971313  T

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Target: chr3; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 151 - 328
Target Start/End: Original strand, 6160744 - 6160921
Alignment:
Q  151 aaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcggagt 250  Q
    ||||||||||||| |||||| ||||||||||| |||||||||| ||||| ||||||||||||||||||| |||||||||||| ||||||| |||||||||    
T  6160744 aaaattgtcttttcaacataatccaaaaacttaggaaattttgtgcatacaactttgaaccgggtccaattatcaatatatgcttcctccatttcggagt 6160843  T
Q  251 ccacaatatccacccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgcttacccattcttgcctttga 328  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  6160844 ccacaatatccatccatgcaaccatcacagtcttcaccaccgaagcacgcttaatcgcttgcccattcttgcctttga 6160921  T

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Target: chr3; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 7 - 140
Target Start/End: Original strand, 52970934 - 52971067
Alignment:
Q  7 ctgagatgaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatacttt 106  Q
    |||| ||||||||||||||||  |||||||||||||||||||||||  ||||||||  |||||||||||||||| |||||| |||||||||| || ||||    
T  52970934 ctgaaatgaagcatgtattgcggtatgttgcaactctagcatgttacaaacggatttccagtttgtactcaaatcacccatactactactcaaatgcttt 52971033  T
Q  107 ttcgactgagcgtgtgcagattcagctctgtttg 140  Q
    ||| || |||||| ||||||||||||||||||||    
T  52971034 ttcaaccgagcgtctgcagattcagctctgtttg 52971067  T

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Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 48094834 - 48094747
Alignment:
Q  12 atgaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcag 99  Q
    ||||||||||||||||  |||||||||||||||||||||||| ||||||||| |||||||||||||||| ||| || |||||||||||    
T  48094834 atgaagcatgtattgcggtatgttgcaactctagcatgttattaacggattgccagtttgtactcaaatcacctatactactactcag 48094747  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 270
Target Start/End: Original strand, 24131885 - 24131989
Alignment:
Q  166 acatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcggagtccacaatatccaccc 265  Q
    |||||||||| ||||||| |  ||||| |||| | ||||||||||||| | ||| |||||| ||||| ||| ||| | || || |||||||||||| |||    
T  24131885 acatattccacaaacttgagccatttttcgcaaacaactttgaaccggctgcaattatcaacatatgtttcttccatatcagaatccacaatatcctccc 24131984  T
Q  266 atgca 270  Q
    |||||    
T  24131985 atgca 24131989  T

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