View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_172 (Length: 326)

Name: NF10145A_low_172
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_172
NF10145A_low_172
[»] chr3 (2 HSPs)
chr3 (16-314)||(19607165-19607463)
chr3 (146-280)||(4576624-4576755)
[»] chr1 (1 HSPs)
chr1 (22-314)||(32604599-32604888)
[»] chr2 (3 HSPs)
chr2 (22-314)||(21022890-21023179)
chr2 (146-280)||(7230748-7230879)
chr2 (146-280)||(7230422-7230553)
[»] chr8 (3 HSPs)
chr8 (22-314)||(24956496-24956785)
chr8 (22-314)||(18176326-18176615)
chr8 (146-243)||(29564540-29564634)
[»] scaffold0005 (1 HSPs)
scaffold0005 (146-272)||(175922-176045)
[»] chr4 (2 HSPs)
chr4 (146-272)||(14641247-14641370)
chr4 (146-280)||(26110691-26110822)
[»] scaffold0020 (1 HSPs)
scaffold0020 (146-243)||(131180-131274)


Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 16 - 314
Target Start/End: Complemental strand, 19607463 - 19607165
Alignment:
Q  16 ctttaagtgtgccatttgaatttaatggcaaaaatactactacaaatgtgccacaagaaataattgactctgatgatagtgaatttgatattggtgacca 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19607463 ctttaagtgtgccatttgaatttaatggcaaaaatactactacaaatgtgccacaagaaataattgactctgatgatagtgaatttgatattggtgacca 19607364  T
Q  116 atttatccctctggaaaatactaaacccaaaaagtaaagaaaggtttcaccagatattaatggagagaaagtgacaaagggaaatgcaaaggttgggacg 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  19607363 atttatccctctggaaaatactaaacccaaaaagtaaagaaaggtttcaccagatattaattgagagaaagtgacaaagggaaaggcaaaggttgggacg 19607264  T
Q  216 acaacaactatgagaaacacatttgagcagttaactgaagcatctgaaggtcataatgaagttgaaaatgctcaaattgcggtcacctctgatgtccat 314  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  19607263 acaacaactatgagaaacacatttgagcggttaactgaagcatctgaaggtcataatgaagttgaaaaggctcaaattgcggtcacctctaatgtccat 19607165  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 146 - 280
Target Start/End: Complemental strand, 4576755 - 4576624
Alignment:
Q  146 aaagtaaagaaaggtttcaccagatattaatggagagaaagtgacaaagggaaatgcaaaggttgggacgacaacaactatgagaaacacatttgagcag 245  Q
    |||| ||||||| ||||||||||||||    || | |||||| |||||||| ||  |||||| |||||| |||||||||||||||| |||||||||||      
T  4576755 aaagaaaagaaatgtttcaccagatatg---ggtgtgaaagttacaaagggtaagacaaaggctgggactacaacaactatgagaatcacatttgagcga 4576659  T
Q  246 ttaactgaagcatctgaaggtcataatgaagttga 280  Q
    |||  | ||||| | ||||||||||||||| ||||    
T  4576658 ttagttcaagcagcagaaggtcataatgaaattga 4576624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 22 - 314
Target Start/End: Original strand, 32604599 - 32604888
Alignment:
Q  22 gtgtgccatttgaatttaatggcaaaaatactactacaaatgtgccacaagaaataattgactctgatgatagtgaatttgatattggtgaccaatttat 121  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||     
T  32604599 gtgtgccattagaatctaatggcaaaaatactactacaaatgtgccacaagaaataattgactctgatgatagtgaatttgatattggtgaccactttag 32604698  T
Q  122 ccctctggaaaatactaaacccaaaaagtaaagaaaggtttcaccagatattaatggagagaaagtgacaaagggaaatgcaaaggttgggacgacaaca 221  Q
    |||| ||||||||||| ||||||||||| ||||||||||||||||| ||||   |||||||||||||||||||||||| |||||||||||||| ||||||    
T  32604699 ccctgtggaaaatactcaacccaaaaagaaaagaaaggtttcaccaaatat---tggagagaaagtgacaaagggaaaggcaaaggttgggacaacaaca 32604795  T
Q  222 actatgagaaacacatttgagcagttaactgaagcatctgaaggtcataatgaagttgaaaatgctcaaattgcggtcacctctgatgtccat 314  Q
    ||||||||||| |||||||||| ||||  | |||||  |||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||    
T  32604796 actatgagaaaaacatttgagcggttagttaaagcagatgaaggtcataatgaagttgaaaaggctcaaattgcggccacctctcatgtccat 32604888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 22 - 314
Target Start/End: Complemental strand, 21023179 - 21022890
Alignment:
Q  22 gtgtgccatttgaatttaatggcaaaaatactactacaaatgtgccacaagaaataattgactctgatgatagtgaatttgatattggtgaccaatttat 121  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||     
T  21023179 gtgtgccattagaatctaatggcaaaaatactactacaaatgtgccacaagaaataattgactctgatgatagtgaatttaatattggtgaccactttag 21023080  T
Q  122 ccctctggaaaatactaaacccaaaaagtaaagaaaggtttcaccagatattaatggagagaaagtgacaaagggaaatgcaaaggttgggacgacaaca 221  Q
    |||| ||||| ||||| ||||||||||| ||||||||||||||||| ||||   |||||||||||||||||||||||| |||||||||||||| ||||||    
T  21023079 ccctatggaatatactcaacccaaaaagaaaagaaaggtttcaccaaatat---tggagagaaagtgacaaagggaaaggcaaaggttgggacaacaaca 21022983  T
Q  222 actatgagaaacacatttgagcagttaactgaagcatctgaaggtcataatgaagttgaaaatgctcaaattgcggtcacctctgatgtccat 314  Q
    ||||||||||| |||||||||| ||||  | |||||  |||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||    
T  21022982 actatgagaaaaacatttgagcggttagtttaagcagttgaaggtcataatgaagttgaaaaggctcaaattgcggccacctctcatgtccat 21022890  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 146 - 280
Target Start/End: Original strand, 7230748 - 7230879
Alignment:
Q  146 aaagtaaagaaaggtttcaccagatattaatggagagaaagtgacaaagggaaatgcaaaggttgggacgacaacaactatgagaaacacatttgagcag 245  Q
    |||| ||||||||||||||||||||||    || |||||||| |||||||| ||  | |||||||||||  |||||||||||||||||||||||||||      
T  7230748 aaagaaaagaaaggtttcaccagatatg---ggtgagaaagttacaaagggtaagaccaaggttgggactgcaacaactatgagaaacacatttgagcga 7230844  T
Q  246 ttaactgaagcatctgaaggtcataatgaagttga 280  Q
    |||  | ||||||| ||| ||||||||||| ||||    
T  7230845 ttagttcaagcatcagaatgtcataatgaaattga 7230879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 146 - 280
Target Start/End: Original strand, 7230422 - 7230553
Alignment:
Q  146 aaagtaaagaaaggtttcaccagatattaatggagagaaagtgacaaagggaaatgcaaaggttgggacgacaacaactatgagaaacacatttgagcag 245  Q
    |||| ||| ||||||||||||||||||    || |||||||| |||||||| ||  | |||||||||||  |||||||||||||||||||||||||||      
T  7230422 aaagaaaaaaaaggtttcaccagatatg---ggtgagaaagttacaaagggtaagaccaaggttgggactgcaacaactatgagaaacacatttgagcga 7230518  T
Q  246 ttaactgaagcatctgaaggtcataatgaagttga 280  Q
    |||  | ||||||| ||| ||||||||||| ||||    
T  7230519 ttagttcaagcatcagaatgtcataatgaaattga 7230553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 183; Significance: 6e-99; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 22 - 314
Target Start/End: Original strand, 24956496 - 24956785
Alignment:
Q  22 gtgtgccatttgaatttaatggcaaaaatactactacaaatgtgccacaagaaataattgactctgatgatagtgaatttgatattggtgaccaatttat 121  Q
    |||| |||||||||| || || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||     
T  24956496 gtgtaccatttgaatctagtgacaaaaatactactacagatgtgccacaagaaataattgactctgatgatagtgaatttgatattggtgaccactttag 24956595  T
Q  122 ccctctggaaaatactaaacccaaaaagtaaagaaaggtttcaccagatattaatggagagaaagtgacaaagggaaatgcaaaggttgggacgacaaca 221  Q
    |||| ||||||||||| ||||||||||| ||||||||||||||||| ||||   ||||| |||||||||||||||||| ||||||||||||||  |||||    
T  24956596 ccctgtggaaaatactcaacccaaaaagaaaagaaaggtttcaccatatat---tggagtgaaagtgacaaagggaaaggcaaaggttgggacttcaaca 24956692  T
Q  222 actatgagaaacacatttgagcagttaactgaagcatctgaaggtcataatgaagttgaaaatgctcaaattgcggtcacctctgatgtccat 314  Q
    | ||||||||| |||||||||| ||||  ||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||    
T  24956693 attatgagaaaaacatttgagcggttagttgaagcagctgaaggtcataatgaagttgaaaaggctcaaattgcggccacctctcatgtccat 24956785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 22 - 314
Target Start/End: Complemental strand, 18176615 - 18176326
Alignment:
Q  22 gtgtgccatttgaatttaatggcaaaaatactactacaaatgtgccacaagaaataattgactctgatgatagtgaatttgatattggtgaccaatttat 121  Q
    ||||||||||||| | || ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||     
T  18176615 gtgtgccatttgattgtagtggcaaaaatactactacagatgtgccacaagaaataattgactccgatgatagtgaatttgatattggtgaccactttag 18176516  T
Q  122 ccctctggaaaatactaaacccaaaaagtaaagaaaggtttcaccagatattaatggagagaaagtgacaaagggaaatgcaaaggttgggacgacaaca 221  Q
    |||| ||||||||||| ||||||||||| ||||||| |||||||||| |||   |||||||||||||||||||||||| |||||||||||||| ||||||    
T  18176515 ccctatggaaaatactcaacccaaaaagaaaagaaaagtttcaccagctat---tggagagaaagtgacaaagggaaaggcaaaggttgggacaacaaca 18176419  T
Q  222 actatgagaaacacatttgagcagttaactgaagcatctgaaggtcataatgaagttgaaaatgctcaaattgcggtcacctctgatgtccat 314  Q
    ||||||||||  |||||||||| ||||  ||||||| | ||||||||||||||||||||||| ||||||||||| | ||||||| ||||||||    
T  18176418 actatgagaagaacatttgagcggttagttgaagcagccgaaggtcataatgaagttgaaaaggctcaaattgcagccacctctcatgtccat 18176326  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 243
Target Start/End: Original strand, 29564540 - 29564634
Alignment:
Q  146 aaagtaaagaaaggtttcaccagatattaatggagagaaagtgacaaagggaaatgcaaaggttgggacgacaacaactatgagaaacacatttgagc 243  Q
    |||| ||||||||||||||||||||||    || |||||||| |||||||| ||    |||||||||||  ||||||| |||||||||||||||||||    
T  29564540 aaagaaaagaaaggtttcaccagatatg---ggtgagaaagttacaaagggtaagaacaaggttgggactgcaacaacaatgagaaacacatttgagc 29564634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 146 - 272
Target Start/End: Complemental strand, 176045 - 175922
Alignment:
Q  146 aaagtaaagaaaggtttcaccagatattaatggagagaaagtgacaaagggaaatgcaaaggttgggacgacaacaactatgagaaacacatttgagcag 245  Q
    |||| ||||||||||||||||||||||    || |||||||| |||||||| ||  | |||||||||||  |||||||||||||||||||||||||||      
T  176045 aaagaaaagaaaggtttcaccagatatg---ggtgagaaagttacaaagggtaagaccaaggttgggactgcaacaactatgagaaacacatttgagcga 175949  T
Q  246 ttaactgaagcatctgaaggtcataat 272  Q
    |||  | ||||| | ||||||||||||    
T  175948 ttagttcaagcagcagaaggtcataat 175922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 146 - 272
Target Start/End: Original strand, 14641247 - 14641370
Alignment:
Q  146 aaagtaaagaaaggtttcaccagatattaatggagagaaagtgacaaagggaaatgcaaaggttgggacgacaacaactatgagaaacacatttgagcag 245  Q
    |||| ||||||||||||||||||||||    || |||||||| |||||||| ||  | |||||||||||  |||||||||||||||||||||||||||      
T  14641247 aaagaaaagaaaggtttcaccagatatg---ggtgagaaagttacaaagggtaagaccaaggttgggactgcaacaactatgagaaacacatttgagcga 14641343  T
Q  246 ttaactgaagcatctgaaggtcataat 272  Q
    |||  | ||||| | ||||||||||||    
T  14641344 ttagttcaagcagcagaaggtcataat 14641370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 146 - 280
Target Start/End: Original strand, 26110691 - 26110822
Alignment:
Q  146 aaagtaaagaaaggtttcaccagatattaatggagagaaagtgacaaagggaaatgcaaaggttgggacgacaacaactatgagaaacacatttgagcag 245  Q
    |||| ||||||||||||||||||||||    || |||||||| |||||||| ||    |||||||||||  ||||||| |||||||||||||||||||      
T  26110691 aaagaaaagaaaggtttcaccagatatg---ggtgagaaagttacaaagggtaagatcaaggttgggactgcaacaacgatgagaaacacatttgagcga 26110787  T
Q  246 ttaactgaagcatctgaaggtcataatgaagttga 280  Q
    |||  | ||||| | ||||||||||||||| ||||    
T  26110788 ttagttcaagcagcagaaggtcataatgaaattga 26110822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 146 - 243
Target Start/End: Original strand, 131180 - 131274
Alignment:
Q  146 aaagtaaagaaaggtttcaccagatattaatggagagaaagtgacaaagggaaatgcaaaggttgggacgacaacaactatgagaaacacatttgagc 243  Q
    |||| ||||||||||||||||||||||    || |||||||| |||||| | ||  | |||||||||||  |||||||||||||||||||||||||||    
T  131180 aaagaaaagaaaggtttcaccagatatg---ggtgagaaagttacaaagtgtaagaccaaggttgggactgcaacaactatgagaaacacatttgagc 131274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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