View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_179 (Length: 322)
Name: NF10145A_low_179
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_179 |
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Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 20 - 307
Target Start/End: Original strand, 43021144 - 43021431
Alignment:
| Q |
20 |
agattttggatacttttgaagggggcatatatagccagagatagcatttttactagcagttttatatggcttcttggtatgccagagatttggtcccata |
119 |
Q |
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| T |
43021144 |
agattttggatacttttgaagggggcatatatggccagagatagcatttttactagcagttttatatggcttcttggtatgccagagatttggtcccata |
43021243 |
T |
|
| Q |
120 |
aagaagtcgcaggaggaatggtagtagtgctgaaacgaatataacatataaacataatttggctcctatccaccttttttagattcttccacaagggccc |
219 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
43021244 |
aagaagtcgcaggaggaatggtagtagtgcagaaacgaatataacatataaacataatatggctcctatccaccttttttagattcttccacaagggccc |
43021343 |
T |
|
| Q |
220 |
caactttgtgtgtctgcttctattttacagaccccactctggatttcatttgtttaatttcattaattgattacactttaacttggat |
307 |
Q |
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|||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43021344 |
caactttgtgtgtctgcttctatttttcagaccccactctgcatttcatttgtttaatttcattaattgattacactttaacttggat |
43021431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 24 - 164
Target Start/End: Complemental strand, 13675784 - 13675644
Alignment:
| Q |
24 |
tttggatacttttgaagggggcatatatagccagagatagcatttttactagcagttttatatggcttcttggtatgccagagatttggtcccataaaga |
123 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||| | |||||| |||||||||| |||||||||||||||| | || ||||||||| || |
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| T |
13675784 |
tttggatacttttgaagggggcatatatagatagagatagcatttgtgctagcatttttatatggtttcttggtatgccagaaaattagtcccataatga |
13675685 |
T |
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| Q |
124 |
agtcgcaggaggaatggtagtagtgctgaaacgaatataac |
164 |
Q |
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| T |
13675684 |
agttgcaggaggaatggtagtaatgcagaaacgaatataac |
13675644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 24 - 164
Target Start/End: Original strand, 19964935 - 19965075
Alignment:
| Q |
24 |
tttggatacttttgaagggggcatatatagccagagatagcatttttactagcagttttatatggcttcttggtatgccagagatttggtcccataaaga |
123 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||| | |||||| |||||||||| |||||||||| ||| | | |||||||||||| || |
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| T |
19964935 |
tttggatacttttgaagggggcatatatagatagagatagcatttgtgctagcatttttatatggtttcttggtatcccaaaaaattggtcccataatga |
19965034 |
T |
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| Q |
124 |
agtcgcaggaggaatggtagtagtgctgaaacgaatataac |
164 |
Q |
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||| |||||||||||||||||| ||| |||||||||||||| |
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| T |
19965035 |
agttgcaggaggaatggtagtaatgcagaaacgaatataac |
19965075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 62 - 164
Target Start/End: Original strand, 50805724 - 50805826
Alignment:
| Q |
62 |
agcatttttactagcagttttatatggcttcttggtatgccagagatttggtcccataaagaagtcgcaggaggaatggtagtagtgctgaaacgaatat |
161 |
Q |
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||||||| | |||||| |||||||||| |||||||||||| ||| | |||||||||||| ||||| |||||||||||||||||| ||| ||||||||||| |
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| T |
50805724 |
agcatttgtgctagcatttttatatggtttcttggtatgctagaaaattggtcccataatgaagttgcaggaggaatggtagtaatgcagaaacgaatat |
50805823 |
T |
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| Q |
162 |
aac |
164 |
Q |
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||| |
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| T |
50805824 |
aac |
50805826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 62 - 164
Target Start/End: Complemental strand, 50870153 - 50870051
Alignment:
| Q |
62 |
agcatttttactagcagttttatatggcttcttggtatgccagagatttggtcccataaagaagtcgcaggaggaatggtagtagtgctgaaacgaatat |
161 |
Q |
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||||||| | |||||| |||||||||| |||||||||| | | | | || ||||||||| ||||| |||||||||||||||||| ||| ||||||||||| |
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| T |
50870153 |
agcatttgtgctagcatttttatatggtttcttggtatacaaaaaaattagtcccataatgaagttgcaggaggaatggtagtaatgcagaaacgaatat |
50870054 |
T |
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| Q |
162 |
aac |
164 |
Q |
| |
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||| |
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| T |
50870053 |
aac |
50870051 |
T |
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