View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_18 (Length: 458)
Name: NF10145A_low_18
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 169 - 442
Target Start/End: Original strand, 24125247 - 24125520
Alignment:
| Q |
169 |
ataagcaacctaactgaaaagaacatttgaaaactttcaaaataagaaaagtgaacactctcaggtggggttgacaaaaactaggtccttgtttccagag |
268 |
Q |
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|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| | |
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| T |
24125247 |
ataagcaatctaactgaaaagaacatttggaaactttcaaaataagaaaagtgaacactcccgggtggggttgacaaaaactaggtccttgtttccaggg |
24125346 |
T |
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| Q |
269 |
atagtctgacctagactcaccccccatcgccctactctattagctccaatataaaatcaaggccaatttccactcgtaataggtacatgatgtatgannn |
368 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
24125347 |
atagtctgacctagactcaccccccatcgccctactctattagctccaatataaaatcaaggccaatttccactcataataggtacatgatgtatgattt |
24125446 |
T |
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| Q |
369 |
nnnncttcaacggaaccattttcagaaagaaaaacaagtggaaagttgattccacatgtgtcccatagagagca |
442 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
24125447 |
ttttcttcaacggaaccattttcagaaagaaaaacaagtggaaagttgattccacatgtgtcctatagagagca |
24125520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 6 - 53
Target Start/End: Original strand, 24124424 - 24124471
Alignment:
| Q |
6 |
acaccatccgtagccatgcataaattgcataccaaactgtgaagataa |
53 |
Q |
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| T |
24124424 |
acaccatccgtagccatgcataaattgcataccaaactgtgaagataa |
24124471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 98 - 144
Target Start/End: Original strand, 24124500 - 24124546
Alignment:
| Q |
98 |
attatatatataaaacaaagaagagatatgatacaagagtcgccaaa |
144 |
Q |
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| T |
24124500 |
attatatatataaaacaaagaagagatacgatacaagagtcgccaaa |
24124546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 169 - 279
Target Start/End: Complemental strand, 45163435 - 45163326
Alignment:
| Q |
169 |
ataagcaacctaactgaaaagaacatttgaaaactttcaaaataagaaaagtgaacactctcaggtggggttgacaaaaactaggtccttgtttccagag |
268 |
Q |
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||||||| | ||| ||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||| ||| ||| ||||||||| || ||| | |
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| T |
45163435 |
ataagcagcgtaattgaaaagaa-atttgaaaactttcaaaataagtaaagtgaacactcctaggtggggttggcaagaaccaggtccttgctttcaggg |
45163337 |
T |
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| Q |
269 |
atagtctgacc |
279 |
Q |
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||||| ||||| |
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| T |
45163336 |
atagtttgacc |
45163326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 380 - 433
Target Start/End: Complemental strand, 45163287 - 45163235
Alignment:
| Q |
380 |
ggaaccattttcagaaagaaaaacaagtggaaagttgattccacatgtgtccca |
433 |
Q |
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|||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
45163287 |
ggaaccattttcagaaagaagaacaagtggaaagttgatt-cacatgtgtccca |
45163235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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