View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_181 (Length: 320)

Name: NF10145A_low_181
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_181
NF10145A_low_181
[»] scaffold0029 (1 HSPs)
scaffold0029 (5-320)||(134449-134765)
[»] scaffold0002 (2 HSPs)
scaffold0002 (5-320)||(312276-312592)
scaffold0002 (5-320)||(327730-328046)
[»] chr4 (11 HSPs)
chr4 (82-320)||(8654746-8654984)
chr4 (5-320)||(3129577-3129890)
chr4 (93-320)||(47541154-47541381)
chr4 (136-320)||(7662966-7663150)
chr4 (173-320)||(2631627-2631774)
chr4 (173-320)||(23873240-23873387)
chr4 (173-320)||(55298849-55298996)
chr4 (173-320)||(20675251-20675398)
chr4 (173-320)||(8486745-8486892)
chr4 (5-62)||(7662904-7662961)
chr4 (255-320)||(49926112-49926177)
[»] chr5 (5 HSPs)
chr5 (5-320)||(10486515-10486831)
chr5 (88-320)||(34481176-34481408)
chr5 (206-320)||(587745-587859)
chr5 (231-320)||(35122528-35122617)
chr5 (276-312)||(27795720-27795756)
[»] chr7 (8 HSPs)
chr7 (8-320)||(15653303-15653616)
chr7 (8-276)||(46623966-46624235)
chr7 (173-320)||(13440282-13440429)
chr7 (172-308)||(12378491-12378627)
chr7 (248-320)||(45943080-45943152)
chr7 (191-314)||(43105546-43105669)
chr7 (277-315)||(27723973-27724011)
chr7 (249-314)||(41339760-41339825)
[»] chr8 (5 HSPs)
chr8 (5-320)||(7452581-7452897)
chr8 (173-317)||(16420774-16420918)
chr8 (249-314)||(12134563-12134628)
chr8 (271-320)||(19384572-19384621)
chr8 (276-312)||(13879354-13879390)
[»] chr1 (7 HSPs)
chr1 (13-320)||(36306013-36306321)
chr1 (82-320)||(21528390-21528632)
chr1 (107-320)||(37530795-37531008)
chr1 (173-320)||(32353061-32353208)
chr1 (173-320)||(48073195-48073342)
chr1 (239-320)||(48265548-48265629)
chr1 (248-320)||(30970447-30970519)
[»] chr3 (11 HSPs)
chr3 (8-320)||(30166942-30167255)
chr3 (82-320)||(49731605-49731843)
chr3 (173-320)||(2813264-2813411)
chr3 (173-320)||(29309637-29309784)
chr3 (173-320)||(6176242-6176389)
chr3 (199-320)||(9379326-9379447)
chr3 (248-320)||(23602002-23602074)
chr3 (256-320)||(25872955-25873019)
chr3 (248-305)||(8943596-8943653)
chr3 (277-315)||(46248738-46248776)
chr3 (276-314)||(48569906-48569944)
[»] chr2 (12 HSPs)
chr2 (8-320)||(45421748-45422062)
chr2 (173-320)||(13550353-13550500)
chr2 (173-320)||(43627728-43627875)
chr2 (173-319)||(26894376-26894522)
chr2 (173-319)||(26899815-26899961)
chr2 (224-320)||(31085452-31085548)
chr2 (224-320)||(33548101-33548197)
chr2 (173-244)||(13550882-13550953)
chr2 (265-320)||(22052856-22052911)
chr2 (265-314)||(36804147-36804196)
chr2 (276-314)||(36804362-36804400)
chr2 (276-312)||(40176905-40176941)
[»] scaffold0418 (2 HSPs)
scaffold0418 (136-320)||(7904-8088)
scaffold0418 (5-62)||(8093-8149)
[»] scaffold0131 (1 HSPs)
scaffold0131 (5-197)||(4144-4337)
[»] chr6 (7 HSPs)
chr6 (173-320)||(25318083-25318230)
chr6 (173-320)||(26205577-26205724)
chr6 (173-320)||(23347231-23347378)
chr6 (173-320)||(15674054-15674205)
chr6 (268-312)||(33630334-33630378)
chr6 (249-312)||(4474935-4474998)
chr6 (290-320)||(1683269-1683299)
[»] scaffold0112 (1 HSPs)
scaffold0112 (249-314)||(15490-15555)


Alignment Details
Target: scaffold0029 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 5 - 320
Target Start/End: Original strand, 134449 - 134765
Alignment:
Q  5 gtttcgtgttggtggagggaggtgagtcgtcttaaggatagtgttggtgagggggagtgtggg-ggtttgtcggccacgtggctaggagggttggagatg 103  Q
    ||||| |||||||||||||||||||||||||||| || ||||| |||||  || ||| | ||  ||||||  |  |  ||||||||||||||||||||||    
T  134449 gtttcatgttggtggagggaggtgagtcgtcttaggggtagtgatggtgctggagagaggggttggtttggtgatcttgtggctaggagggttggagatg 134548  T
Q  104 gttctgatacgttgttttggttggatagggagttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtc 203  Q
    |  || |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  134549 gagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtc 134648  T
Q  204 tgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgt 303  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  134649 tgtggcagacttgttatctattgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgt 134748  T
Q  304 agggctttacttcttga 320  Q
    |||||||||||||||||    
T  134749 agggctttacttcttga 134765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 5 - 320
Target Start/End: Original strand, 312276 - 312592
Alignment:
Q  5 gtttcgtgttggtggagggaggtgagtcgtcttaaggatagtgttggtgagggggagtgtggg-ggtttgtcggccacgtggctaggagggttggagatg 103  Q
    ||||| |||||||||||||||||||||||||||| || ||||| |||||  || ||| | ||  ||||||  |  |  ||||||||||||||||||||||    
T  312276 gtttcatgttggtggagggaggtgagtcgtcttaggggtagtgatggtgctggagagaggggttggtttggtgatcttgtggctaggagggttggagatg 312375  T
Q  104 gttctgatacgttgttttggttggatagggagttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtc 203  Q
    |  || |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  312376 gagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtc 312475  T
Q  204 tgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgt 303  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  312476 tgtggcagacttgttatctattgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgt 312575  T
Q  304 agggctttacttcttga 320  Q
    |||||||||||||||||    
T  312576 agggctttacttcttga 312592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 5 - 320
Target Start/End: Original strand, 327730 - 328046
Alignment:
Q  5 gtttcgtgttggtggagggaggtgagtcgtcttaaggatagtgttggtgagggggagtgtggg-ggtttgtcggccacgtggctaggagggttggagatg 103  Q
    ||||| |||||||||||||||||||||||||||| || ||||| |||||  || ||| | ||  ||||||  |  |  ||||||||||||||||||||||    
T  327730 gtttcatgttggtggagggaggtgagtcgtcttaggggtagtgatggtgctggagagaggggttggtttggtgatcttgtggctaggagggttggagatg 327829  T
Q  104 gttctgatacgttgttttggttggatagggagttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtc 203  Q
    |  || |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  327830 gagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtc 327929  T
Q  204 tgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgt 303  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  327930 tgtggcagacttgttatctattgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgt 328029  T
Q  304 agggctttacttcttga 320  Q
    |||||||||||||||||    
T  328030 agggctttacttcttga 328046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 82 - 320
Target Start/End: Original strand, 8654746 - 8654984
Alignment:
Q  82 gtggctaggagggttggagatggttctgatacgttgttttggttggatagggagttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagt 181  Q
    |||||||||||||||||||||||  || |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  8654746 gtggctaggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagt 8654845  T
Q  182 taacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtggga 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8654846 taacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtggga 8654945  T
Q  282 ggaggacttgttagcggagtgtagggctttacttcttga 320  Q
    |||||||||||||||||||||||||||||||||||||||    
T  8654946 ggaggacttgttagcggagtgtagggctttacttcttga 8654984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 5 - 320
Target Start/End: Original strand, 3129577 - 3129890
Alignment:
Q  5 gtttcgtgttggtggagggaggtgagtcgtcttaaggatagtgttggtgagggggagtgtggg-ggtttgtcggccacgtggctaggagggttggagatg 103  Q
    |||||||||||||||||||||||||||||| ||| || ||||| |||||| || ||| | ||  ||||||| |  || ||||||||||||||||||||||    
T  3129577 gtttcgtgttggtggagggaggtgagtcgttttaggggtagtgatggtgatggagagggcggctggtttgttgatcatgtggctaggagggttggagatg 3129676  T
Q  104 gttctgatacgttgttttggttggatagggagttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtc 203  Q
    |  ||||||| ||||||||||| | ||||  ||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||| |||||    
T  3129677 gagctgatacattgttttggtttggtaggtggttaggggatgttcctttttgtgtccgttttagtagactgtttgagttaacagagaataagttcatgtc 3129776  T
Q  204 tgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgt 303  Q
    ||||||||||||||| ||| ||||||||||||||   ||||||  |||||||||||||||| | ||||||||||||||||||    ||||||||||||||    
T  3129777 tgtggcagacttgttctctattgattcggagcagctaggggttacgtggaggtggagacgttgtttgtggcagtgggaggag---atgttagcggagtgt 3129873  T
Q  304 agggctttacttcttga 320  Q
    |||||||||||||||||    
T  3129874 agggctttacttcttga 3129890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 93 - 320
Target Start/End: Complemental strand, 47541381 - 47541154
Alignment:
Q  93 ggttggagatggttctgatacgttgttttggttggatagggagttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaat 192  Q
    ||||||||||||   |||||||||||||||||| ||||||  |||||||||||||||||||||||| |||||  |||| |||||||||||||||||||||    
T  47541381 ggttggagatggagatgatacgttgttttggtttgataggtggttaggggatgttcctttttgtgttcgtttttgtagactgtttgagttaacagagaat 47541282  T
Q  193 aagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgt 292  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||  ||| ||| ||||||||||||||||| | |||||||||||| |||||||  |||    
T  47541281 aagttcatgtctgtggcagacttgttttctgttgattcggagcagccgggagttatgtggaggtggagacgtcgtttgtggcagtggaaggaggagatgt 47541182  T
Q  293 tagcggagtgtagggctttacttcttga 320  Q
    ||||||||||||||||||||||||||||    
T  47541181 tagcggagtgtagggctttacttcttga 47541154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 136 - 320
Target Start/End: Original strand, 7662966 - 7663150
Alignment:
Q  136 ttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagc 235  Q
    |||||||||||||| || ||||||||||| |||||  |||||||||||| |||||||||| | |||||| ||||||||||||| |||||||||| |||||    
T  7662966 ttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaatagagaataagctcatgtctatggcagacttgttctctgttgatttggagc 7663065  T
Q  236 agtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttga 320  Q
    ||  |||| |||| ||||||||||| ||||| ||||||||||||||||||||  |||||| |||||||| |||||||||||||||    
T  7663066 agcaggggtttttttggaggtggaggcgtagattgtggcagtgggaggaggagatgttagtggagtgtatggctttacttcttga 7663150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 173 - 320
Target Start/End: Complemental strand, 2631774 - 2631627
Alignment:
Q  173 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtg 272  Q
    |||||||||||||||||||||||| |||||||||||| |||||| | |||||||||||||||| ||||||||   |||||||||||||||||||||| ||    
T  2631774 tgtttgagttaacagagaataagtctatgtctgtggccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatg 2631675  T
Q  273 gcagtgggaggaggacttgttagcggagtgtagggctttacttcttga 320  Q
    ||||||||||||||| ||| |||  |||||||||||||||||||||||    
T  2631674 gcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 2631627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 173 - 320
Target Start/End: Original strand, 23873240 - 23873387
Alignment:
Q  173 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtg 272  Q
    |||||||||||||||||||||||| |||||| || || |||||| | |||||||||||||||| ||||||||   |||||||||||||||||||||  ||    
T  23873240 tgtttgagttaacagagaataagtctatgtccgttgccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggtaatg 23873339  T
Q  273 gcagtgggaggaggacttgttagcggagtgtagggctttacttcttga 320  Q
    ||||||||||||||| ||| |||  |||||||||||||||||||||||    
T  23873340 gcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 23873387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 173 - 320
Target Start/End: Complemental strand, 55298996 - 55298849
Alignment:
Q  173 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtg 272  Q
    |||||||||||||||||||||||| |||||| || || |||||| | |||||||||||||||| ||||||||   ||||||||||||||||||| || ||    
T  55298996 tgtttgagttaacagagaataagtctatgtccgttgccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtagtttatg 55298897  T
Q  273 gcagtgggaggaggacttgttagcggagtgtagggctttacttcttga 320  Q
    ||||||||||||||| ||| |||  |||||||||||||||||||||||    
T  55298896 gcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 55298849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 173 - 320
Target Start/End: Complemental strand, 20675398 - 20675251
Alignment:
Q  173 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtg 272  Q
    |||||||||||||||||||||||| ||| || ||||| |||||| | | |||||||||||||| ||||||||   |||||||||||||||||||||| ||    
T  20675398 tgtttgagttaacagagaataagtctatatccgtggccgacttgctctttgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatg 20675299  T
Q  273 gcagtgggaggaggacttgttagcggagtgtagggctttacttcttga 320  Q
    ||||||||||||||| ||| | |  ||||||||| |||||||||||||    
T  20675298 gcagtgggaggaggagttgcttgatgagtgtaggactttacttcttga 20675251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 173 - 320
Target Start/End: Original strand, 8486745 - 8486892
Alignment:
Q  173 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtg 272  Q
    |||||||||||||||||||||||| |||||| || |  |||||| | |||||||||||||| | ||||||||   |||||||||||||||||||||| ||    
T  8486745 tgtttgagttaacagagaataagtctatgtccgtcgtcgacttgctctctgttgattcggaccggtggggggaggtgtggaggtggagacgtaggttatg 8486844  T
Q  273 gcagtgggaggaggacttgttagcggagtgtagggctttacttcttga 320  Q
    |||||||||| |||| ||| |||   ||||||||||||||||||||||    
T  8486845 gcagtgggagaaggagttgctagattagtgtagggctttacttcttga 8486892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 7662904 - 7662961
Alignment:
Q  5 gtttcgtgttggtggagggaggtgagtcgtcttaaggatagtgttggtgagggggagt 62  Q
    ||||||||||||||| |||||||||||||| ||| |||||||| ||||||||| ||||    
T  7662904 gtttcgtgttggtggggggaggtgagtcgtattagggatagtggtggtgagggtgagt 7662961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 320
Target Start/End: Original strand, 49926112 - 49926177
Alignment:
Q  255 gtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttga 320  Q
    |||||| || || ||||||  |||||||||||| ||||||| ||||||||||||||| || |||||    
T  49926112 gtggaggcggagattgtgggcgtgggaggaggagttgttagtggagtgtagggcttttctgcttga 49926177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 5 - 320
Target Start/End: Original strand, 10486515 - 10486831
Alignment:
Q  5 gtttcgtgttggtggagggaggtgagtcgtcttaaggatagtgttggtgagggggagtgtggg-ggtttgtcggccacgtggctaggagggttggagatg 103  Q
    |||||||||||||||||||||||||||||||||| || ||||| |||||| || |||||  |  ||||||| |  || ||||||||||||||||||||||    
T  10486515 gtttcgtgttggtggagggaggtgagtcgtcttaggggtagtgatggtgatggagagtgcagctggtttgttgatcatgtggctaggagggttggagatg 10486614  T
Q  104 gttctgatacgttgttttggttggatagggagttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtc 203  Q
    |  ||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||    
T  10486615 gagctgatacgttgttttggttggataggtggttaggggatcttcctttttgtgtccgttttcgtaggctgtttgagttaacatagaataagttcatgtc 10486714  T
Q  204 tgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgt 303  Q
    ||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  10486715 tgtggcagacttgttctctgttgattcggagcagcggggggttatgtggaggtggagacgtaggttgtggcagtgggaggaggacatgttagcggagtgt 10486814  T
Q  304 agggctttacttcttga 320  Q
    |||||||||||||||||    
T  10486815 agggctttacttcttga 10486831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 88 - 320
Target Start/End: Complemental strand, 34481408 - 34481176
Alignment:
Q  88 aggagggttggagatggttctgatacgttgttttggttggatagggagttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacag 187  Q
    ||||| ||||| |||||  ||||||| | ||||||||  ||||||  ||||||||| |||||| |||||||  | ||  || || |||||||||||||||    
T  34481408 aggagagttggtgatggggctgatacttcgttttggtccgataggtggttaggggaggttcctctttgtgtgaggtttagtcggttgtttgagttaacag 34481309  T
Q  188 agaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggagga 287  Q
    ||||||||| ||||||||||||| | ||| | |||||||||||||||| ||||||||   |||||||||||||||||||||| ||||||||||||||||     
T  34481308 agaataagtctatgtctgtggcatatttgctctctgttgattcggagcggtggggggaagtgtggaggtggagacgtaggttatggcagtgggaggaggg 34481209  T
Q  288 cttgttagcggagtgtagggctttacttcttga 320  Q
     ||| ||| ||||||||||||||||||||||||    
T  34481208 gttgctagaggagtgtagggctttacttcttga 34481176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 206 - 320
Target Start/End: Complemental strand, 587859 - 587745
Alignment:
Q  206 tggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtag 305  Q
    ||||| ||||||| |||||   ||||||||| ||||||| | | ||||||||||| |||||| | |||  ||||||||||||  |||||| |||||||||    
T  587859 tggcaaacttgttctctgtgagttcggagcattggggggatgtctggaggtggaggcgtaggctatggatgtgggaggaggatatgttagaggagtgtag 587760  T
Q  306 ggctttacttcttga 320  Q
    |||||||||||||||    
T  587759 ggctttacttcttga 587745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 320
Target Start/End: Original strand, 35122528 - 35122617
Alignment:
Q  231 ggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttga 320  Q
    ||||||| | ||||||  |||||||||||||||||||||||||   |||||||||   || |||| ||||  |||||||||||| |||||    
T  35122528 ggagcagggaggggttgggtggaggtggagacgtaggttgtgggcttgggaggagactttattagaggagcttagggctttactgcttga 35122617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 312
Target Start/End: Complemental strand, 27795756 - 27795720
Alignment:
Q  276 gtgggaggaggacttgttagcggagtgtagggcttta 312  Q
    |||||||||||||||| ||| ||||||||||||||||    
T  27795756 gtgggaggaggacttggtagaggagtgtagggcttta 27795720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 8 - 320
Target Start/End: Original strand, 15653303 - 15653616
Alignment:
Q  8 tcgtgttggtggagggaggtgagtcgtcttaaggatagtgttggtgagggggagtgtggg-ggtttgtcggccacgtggctaggagggttggagatggtt 106  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||| ||||||| ||||||||||||||||||||||||||||| |    
T  15653303 tcgtgttggtggagggaggtgagtcgtcttagggatagtgttggtgagggtgattgtgggtggtttgttggccacgtggctaggagggttggagatggat 15653402  T
Q  107 ctgatacgttgttttggttggatagggagttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgt 206  Q
    ||||||||||||||||||| ||||||  ||||||||||||||||||||||| |||||| ||||| |||||||||||||| ||||||||| | |||||| |    
T  15653403 ctgatacgttgttttggtttgataggtggttaggggatgttcctttttgtgcccgttttcgtagactgtttgagttaacggagaataagctcatgtctat 15653502  T
Q  207 ggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagg 306  Q
    |||||||||||| |||||||||| |||||||  ||||||||| ||||||||||| ||||| ||||||||||||||||||||  |||||||||||||||||    
T  15653503 ggcagacttgttctctgttgatttggagcagcagggggttttctggaggtggaggcgtagattgtggcagtgggaggaggagatgttagcggagtgtagg 15653602  T
Q  307 gctttacttcttga 320  Q
    ||||||||||||||    
T  15653603 gctttacttcttga 15653616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 8 - 276
Target Start/End: Complemental strand, 46624235 - 46623966
Alignment:
Q  8 tcgtgttggtggagggaggtgagtcgtcttaaggatagtgttggtgagggggagtgtggg-ggtttgtcggccacgtggctaggagggttggagatggtt 106  Q
    ||||||||||||||||||||||||||| ||| |||||||||||| ||||| || |||||| ||||||| || |||||||||||||||||| |||||||||    
T  46624235 tcgtgttggtggagggaggtgagtcgtattagggatagtgttggcgagggtgactgtgggtggtttgttggtcacgtggctaggagggttagagatggtt 46624136  T
Q  107 ctgatacgttgttttggttggatagggagttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgt 206  Q
    ||||||||||||||||||| ||||||  |||||||||||||||||| ||||||||||| || || |||||||||||||| ||||||||| | ||||||||    
T  46624135 ctgatacgttgttttggtttgataggtggttaggggatgttcctttctgtgtccgttttcgcagactgtttgagttaacggagaataagctcatgtctgt 46624036  T
Q  207 ggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcag 276  Q
    |||||||||||| |||||||||| |||||||  |||  |||| ||||||||||| ||||| |||||||||    
T  46624035 ggcagacttgttctctgttgatttggagcagcagggatttttttggaggtggaggcgtagtttgtggcag 46623966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 173 - 320
Target Start/End: Complemental strand, 13440429 - 13440282
Alignment:
Q  173 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtg 272  Q
    |||||||||||||||||||||||| |||||| || || |||||| | |||||||||||||||| ||||||||   ||||||||||||||||||| || ||    
T  13440429 tgtttgagttaacagagaataagtctatgtccgttgccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtagtttatg 13440330  T
Q  273 gcagtgggaggaggacttgttagcggagtgtagggctttacttcttga 320  Q
    | ||||||||||||| ||| |||  |||||| ||||||||||||||||    
T  13440329 gtagtgggaggaggagttgctagatgagtgttgggctttacttcttga 13440282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 172 - 308
Target Start/End: Original strand, 12378491 - 12378627
Alignment:
Q  172 ctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgt 271  Q
    |||||||||||||  ||||||||| | |||||||||||| | ||||| | |||| | ||| ||| |||||||| ||||| |||| |||| || |||||||    
T  12378491 ctgtttgagttaatggagaataagatcatgtctgtggcaaatttgttctttgttaagtcgaagcggtggggggatttgttgaggcggaggcgcaggttgt 12378590  T
Q  272 ggcagtgggaggaggacttgttagcggagtgtagggc 308  Q
    ||||||||||||||||  |||||||||||||||||||    
T  12378591 ggcagtgggaggaggagatgttagcggagtgtagggc 12378627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 248 - 320
Target Start/End: Complemental strand, 45943152 - 45943080
Alignment:
Q  248 tgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttga 320  Q
    |||||||||||||| |||| || ||||||||||||||||| ||| ||| ||||||||||||||||||||||||    
T  45943152 tgtggaggtggagatgtagattatggcagtgggaggaggagttgctagaggagtgtagggctttacttcttga 45943080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 191 - 314
Target Start/End: Complemental strand, 43105669 - 43105546
Alignment:
Q  191 ataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggactt 290  Q
    |||||| | |||| |||||||||||||| |||  |  |||| | || ||||| | ||||||||||||||| || ||||||||||| |||||||||||  |    
T  43105669 ataagtctttgtcggtggcagacttgttctctactagttcgcaacaatggggagatttgtggaggtggaggcgcaggttgtggcaatgggaggaggagat 43105570  T
Q  291 gttagcggagtgtagggctttact 314  Q
    |||||| ||||||||||| |||||    
T  43105569 gttagcagagtgtagggcgttact 43105546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 315
Target Start/End: Original strand, 27723973 - 27724011
Alignment:
Q  277 tgggaggaggacttgttagcggagtgtagggctttactt 315  Q
    |||||||| |||||||||| |||||||||||||||||||    
T  27723973 tgggaggaagacttgttaggggagtgtagggctttactt 27724011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 314
Target Start/End: Complemental strand, 41339825 - 41339760
Alignment:
Q  249 gtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttact 314  Q
    |||||||||| || | |||||||||  |||||||||||| || |||| |||||||||| |||||||    
T  41339825 gtggaggtggcgatgcaggttgtgggcgtgggaggaggaattattagaggagtgtaggactttact 41339760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 5 - 320
Target Start/End: Complemental strand, 7452897 - 7452581
Alignment:
Q  5 gtttcgtgttggtggagggaggtgagtcgtcttaaggatagtgttggtgagggggagtgtggg-ggtttgtcggccacgtggctaggagggttggagatg 103  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||| ||||| ||| ||||||||||||||||||||||||||    
T  7452897 gtttcgtgttggtggagggaggtgagtcgtcttagggatagtgttggtgagggtgattgtgggtggtttctcgcccacgtggctaggagggttggagatg 7452798  T
Q  104 gttctgatacgttgttttggttggatagggagttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtc 203  Q
    |||||||||||||||||||||  ||||||  |||||||||||||||||| ||||||||||| ||||| |||||||||||||| ||||||||| |||||||    
T  7452797 gttctgatacgttgttttggtatgataggtggttaggggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggagaataagcttatgtc 7452698  T
Q  204 tgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgt 303  Q
    ||||||||||||||| |||||||||| |||||||  ||||||| | ||||||||||| ||||| |||||||||||||||||||  || |||| |||||||    
T  7452697 tgtggcagacttgttctctgttgatttggagcagcagggggttgtttggaggtggaggcgtagattgtggcagtgggaggaggtgttattagaggagtgt 7452598  T
Q  304 agggctttacttcttga 320  Q
    |||||||||||||||||    
T  7452597 agggctttacttcttga 7452581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 173 - 317
Target Start/End: Original strand, 16420774 - 16420918
Alignment:
Q  173 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtg 272  Q
    |||||||||||||||||||||||| |||||||||||| |||||| | |||||||||||||||| ||||||||   |||||||||||||||||||||| ||    
T  16420774 tgtttgagttaacagagaataagtctatgtctgtggccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatg 16420873  T
Q  273 gcagtgggaggaggacttgttagcggagtgtagggctttacttct 317  Q
    ||||||||||||||| ||| |||  ||| ||||||||||||||||    
T  16420874 gcagtgggaggaggagttgctagatgagcgtagggctttacttct 16420918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 314
Target Start/End: Complemental strand, 12134628 - 12134563
Alignment:
Q  249 gtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttact 314  Q
    |||||||||| | |||| |||||||  |||||||||||||||| ||| ||||||||||||||||||    
T  12134628 gtggaggtggcggcgtacgttgtgggcgtgggaggaggacttggtagaggagtgtagggctttact 12134563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 271 - 320
Target Start/End: Original strand, 19384572 - 19384621
Alignment:
Q  271 tggcagtgggaggaggacttgttagcggagtgtagggctttacttcttga 320  Q
    |||||||||||||||||  |||||| ||||||||||||||||||||||||    
T  19384572 tggcagtgggaggaggagatgttagtggagtgtagggctttacttcttga 19384621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 312
Target Start/End: Original strand, 13879354 - 13879390
Alignment:
Q  276 gtgggaggaggacttgttagcggagtgtagggcttta 312  Q
    |||||||||||||||| ||| ||||||||||||||||    
T  13879354 gtgggaggaggacttggtagaggagtgtagggcttta 13879390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 13 - 320
Target Start/End: Complemental strand, 36306321 - 36306013
Alignment:
Q  13 ttggtggagggaggtgagtcgtcttaaggatagtgttggtgagggggagtgtggg-ggtttgtcggccacgtggctaggagggttggagatggttctgat 111  Q
    ||||||||||||||||||||||||||  ||||||||| ||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  36306321 ttggtggagggaggtgagtcgtcttagtgatagtgttagtgagggtgattgtgggtggtttgtcggccacgtggctaggagggttggagatggttctgat 36306222  T
Q  112 acgttgttttggttggatagggagttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcag 211  Q
    |||||||||||||  ||||||  |||||||||||||||||| ||||||| ||| ||||| |||||||||||||| ||||||||| | |||| ||||||||    
T  36306221 acgttgttttggtatgataggtggttaggggatgttcctttctgtgtcctttttcgtagactgtttgagttaacggagaataagctcatgtatgtggcag 36306122  T
Q  212 acttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggcttt 311  Q
    ||||||| |||||||||| |||||||  ||||||| | ||||||||||| ||||| |||||||||||| |||||||  |||||| |||||||||||||||    
T  36306121 acttgttctctgttgatttggagcagcagggggttgtttggaggtggaggcgtagattgtggcagtggaaggaggagatgttagaggagtgtagggcttt 36306022  T
Q  312 acttcttga 320  Q
    |||||||||    
T  36306021 acttcttga 36306013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 82 - 320
Target Start/End: Complemental strand, 21528632 - 21528390
Alignment:
Q  82 gtggctaggagggttggagatggttctgatacgttgttttggttggatagggagttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagt 181  Q
    ||||||||||||||||||||||   ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||    
T  21528632 gtggctaggagggttggagatgaagctgatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgttttcgtaggctgtttgagt 21528533  T
Q  182 taacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtggga 281  Q
    |||||||||||||||| |||||||| | ||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||| ||| |||||||    
T  21528532 taacagagaataagttcatgtctgttggagacttgttctctgttgattcggagcaatggggggttatgtggaggtggagacgtaggttatggtagtggga 21528433  T
Q  282 ggaggacttgttagcggag----tgtagggctttacttcttga 320  Q
    ||||||| ||||||||| |     |||||||||||||||||||    
T  21528432 ggaggacatgttagcggtggagacgtagggctttacttcttga 21528390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 107 - 320
Target Start/End: Complemental strand, 37531008 - 37530795
Alignment:
Q  107 ctgatacgttgttttggttggatagggagttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgt 206  Q
    ||||||| | ||||||||  ||||||  ||||||||| |||||| |||||||  |  |  || || |||||||||||||||||||||||  ||||| |||    
T  37531008 ctgatacttcgttttggtctgataggtggttaggggaggttcctctttgtgtgagacttagtcggttgtttgagttaacagagaataagactatgtatgt 37530909  T
Q  207 ggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagg 306  Q
    |||||||||| | |||||||||||||||| ||||||||   |||||||||||||||||||||| ||||||||||||||||  ||| ||| ||||||||||    
T  37530908 ggcagacttgctctctgttgattcggagcggtggggggaagtgtggaggtggagacgtaggttatggcagtgggaggaggggttgctagaggagtgtagg 37530809  T
Q  307 gctttacttcttga 320  Q
    ||||||||||||||    
T  37530808 gctttacttcttga 37530795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 173 - 320
Target Start/End: Original strand, 32353061 - 32353208
Alignment:
Q  173 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtg 272  Q
    |||||||||||||||||||||||| |||||| ||||| |||||| | |||||||||||||||| ||||||||   |||||||||||||||||||||| ||    
T  32353061 tgtttgagttaacagagaataagtctatgtccgtggccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatg 32353160  T
Q  273 gcagtgggaggaggacttgttagcggagtgtagggctttacttcttga 320  Q
    ||||||| ||||||| ||| |||  |||||||||||||||||||||||    
T  32353161 gcagtggaaggaggagttgctagatgagtgtagggctttacttcttga 32353208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 173 - 320
Target Start/End: Original strand, 48073195 - 48073342
Alignment:
Q  173 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtg 272  Q
    |||||||||||||||||||||||| |||||| || || |||||| | |||||||||||||||| ||||||||   |||||||||||||||||||||| ||    
T  48073195 tgtttgagttaacagagaataagtctatgtccgttgccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatg 48073294  T
Q  273 gcagtgggaggaggacttgttagcggagtgtagggctttacttcttga 320  Q
    | ||||||||||||| ||| |||  |||||| ||||||||||||||||    
T  48073295 ggagtgggaggaggagttgctagatgagtgtggggctttacttcttga 48073342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 239 - 320
Target Start/End: Original strand, 48265548 - 48265629
Alignment:
Q  239 ggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttga 320  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  48265548 ggggggttatgtggaggtggagacgtaggttgtggcagtgggaggaggagttgttagcggagtgtagggctttacttcttga 48265629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 248 - 320
Target Start/End: Original strand, 30970447 - 30970519
Alignment:
Q  248 tgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttga 320  Q
    ||||||||||||| ||||| ||||||  ||||||||||||  || | |||||||||||||| |||||||||||    
T  30970447 tgtggaggtggaggcgtagattgtgggcgtgggaggaggagatggtggcggagtgtagggccttacttcttga 30970519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 8 - 320
Target Start/End: Original strand, 30166942 - 30167255
Alignment:
Q  8 tcgtgttggtggagggaggtgagtcgtcttaaggatagtgttggtgagggggagtgtggg-ggtttgtcggccacgtggctaggagggttggagatggtt 106  Q
    ||||||||||||||||||||||||||| ||| |||||||| ||||||||| || |||||| ||||||  || |||||||||||||||||||| |||||||    
T  30166942 tcgtgttggtggagggaggtgagtcgtattagggatagtgctggtgagggtgactgtgggtggtttggtggtcacgtggctaggagggttggtgatggtt 30167041  T
Q  107 ctgatacgttgttttggttggatagggagttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgt 206  Q
    ||||||||||||||||||||||||||  ||||||||||||||| || ||||||||||| |||||  ||||||||||||||||||||||| | |||| |||    
T  30167042 ctgatacgttgttttggttggataggtggttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaacagagaataagctcatgtttgt 30167141  T
Q  207 ggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagg 306  Q
    |||||||||||| |||||||||  |||||||  ||| ||||| ||||||||||| ||||| ||||||||||||||||||||  |||||||||||||||||    
T  30167142 ggcagacttgttctctgttgatctggagcagcagggtgttttttggaggtggaggcgtagattgtggcagtgggaggaggagatgttagcggagtgtagg 30167241  T
Q  307 gctttacttcttga 320  Q
     |||||||||||||    
T  30167242 actttacttcttga 30167255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 82 - 320
Target Start/End: Original strand, 49731605 - 49731843
Alignment:
Q  82 gtggctaggagggttggagatggttctgatacgttgttttggttggatagggagttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagt 181  Q
    |||||||||||||||||||||||  |||| || ||||||||||| ||||||  |||||||||||||||||||||||||||||| ||||| ||||||||||    
T  49731605 gtggctaggagggttggagatggagctgacacattgttttggtttgataggtggttaggggatgttcctttttgtgtccgttttcgtagactgtttgagt 49731704  T
Q  182 taacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtggga 281  Q
    |||||||||||||||| |||| ||||||||||||||| ||||||||| |||||||| |||||||| ||||||||||||||||||| ||||||||||||||    
T  49731705 taacagagaataagttcatgtatgtggcagacttgttctctgttgatccggagcagcggggggttatgtggaggtggagacgtagtttgtggcagtggga 49731804  T
Q  282 ggaggacttgttagcggagtgtagggctttacttcttga 320  Q
    |||||| ||||| ||||||||||||||||||||||||||    
T  49731805 ggaggagttgttggcggagtgtagggctttacttcttga 49731843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 173 - 320
Target Start/End: Original strand, 2813264 - 2813411
Alignment:
Q  173 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtg 272  Q
    |||||||||||||||||||||||| |||||| || || |||||| | |||||||||||||||| ||||||||   |||||||||||||||||||||| ||    
T  2813264 tgtttgagttaacagagaataagtctatgtccgttgccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatg 2813363  T
Q  273 gcagtgggaggaggacttgttagcggagtgtagggctttacttcttga 320  Q
    ||||||||||||||| ||| |||  |||||||||||||||||||||||    
T  2813364 gcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 2813411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 173 - 320
Target Start/End: Complemental strand, 29309784 - 29309637
Alignment:
Q  173 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtg 272  Q
    |||||||||||||||||||||||| |||||| ||||| |||||| | ||||| |||||||||| ||||||||   |||||||||||||||||||||| ||    
T  29309784 tgtttgagttaacagagaataagtctatgtccgtggccgacttgctctctgtcgattcggagcggtggggggaggtgtggaggtggagacgtaggttatg 29309685  T
Q  273 gcagtgggaggaggacttgttagcggagtgtagggctttacttcttga 320  Q
    ||||||||||||||| ||| |||  ||||||||||| |||||||||||    
T  29309684 gcagtgggaggaggagttgctagatgagtgtagggcgttacttcttga 29309637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 173 - 320
Target Start/End: Original strand, 6176242 - 6176389
Alignment:
Q  173 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtg 272  Q
    |||||||||||| ||||||||||| |||||| || || |||||| | |||||||||||||||| ||||||||   |||||||||||||||||||||| |     
T  6176242 tgtttgagttaatagagaataagtctatgtccgtcgccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttata 6176341  T
Q  273 gcagtgggaggaggacttgttagcggagtgtagggctttacttcttga 320  Q
    ||||||||||||||| ||| |||  |||||||||||||||||||||||    
T  6176342 gcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 6176389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 199 - 320
Target Start/End: Complemental strand, 9379447 - 9379326
Alignment:
Q  199 atgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcgg 298  Q
    |||| ||||||| ||||||| | ||||||||| ||||||||||||| ||||||||||||||| || ||||| ||||||||||||||||   |||||||||    
T  9379447 atgtatgtggcaaacttgttctatgttgattcagagcagtggggggatttgtggaggtggaggcgcaggttatggcagtgggaggaggggatgttagcgg 9379348  T
Q  299 agtgtagggctttacttcttga 320  Q
    |||||||||| ||||| |||||    
T  9379347 agtgtagggcattactacttga 9379326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 248 - 320
Target Start/End: Complemental strand, 23602074 - 23602002
Alignment:
Q  248 tgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttga 320  Q
    ||||||||||||||| |||||| ||||||||||||||||| ||| |||  |||||||||||||||||||||||    
T  23602074 tgtggaggtggagacataggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 23602002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 256 - 320
Target Start/End: Original strand, 25872955 - 25873019
Alignment:
Q  256 tggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttga 320  Q
    |||||||||||||| ||||||||||||||||  ||| ||| ||||||||||||||||||| ||||    
T  25872955 tggagacgtaggttatggcagtgggaggaggggttgctagaggagtgtagggctttactttttga 25873019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 248 - 305
Target Start/End: Complemental strand, 8943653 - 8943596
Alignment:
Q  248 tgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtag 305  Q
    |||||| |||||||||||||||||||  ||||||||| || |||| ||||||||||||    
T  8943653 tgtggaagtggagacgtaggttgtgggcgtgggaggaagatttgtaagcggagtgtag 8943596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 315
Target Start/End: Original strand, 46248738 - 46248776
Alignment:
Q  277 tgggaggaggacttgttagcggagtgtagggctttactt 315  Q
    |||||||| |||||||||| |||||||||||||||||||    
T  46248738 tgggaggaagacttgttaggggagtgtagggctttactt 46248776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 314
Target Start/End: Original strand, 48569906 - 48569944
Alignment:
Q  276 gtgggaggaggacttgttagcggagtgtagggctttact 314  Q
    |||||||||||||||| ||| ||||||||||||||||||    
T  48569906 gtgggaggaggacttggtagaggagtgtagggctttact 48569944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 171; Significance: 8e-92; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 8 - 320
Target Start/End: Complemental strand, 45422062 - 45421748
Alignment:
Q  8 tcgtgttggtggagggaggtgagtcgtcttaaggatagtgttggtgagggggagtgtggg-ggtttgtcggccacgtggctaggagggttggagatggtt 106  Q
    ||||||||||||||||||||||||||| ||| |||||||| ||||||||| || |||||| ||||||  || |||||||||||||||||||| |||||||    
T  45422062 tcgtgttggtggagggaggtgagtcgtattagggatagtgctggtgagggtgactgtgggtggtttggtggtcacgtggctaggagggttggtgatggtt 45421963  T
Q  107 ctgatacgttgttttggttggatagggagttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgt 206  Q
    ||||||||||||||||||||||||||  ||||||||||||||| || ||||||||||| |||||  ||||||||||||||||||||||| | |||| |||    
T  45421962 ctgatacgttgttttggttggataggtggttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaacagagaataagctcatgtatgt 45421863  T
Q  207 ggcagacttgttatctgttgattcggagcag-tggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtag 305  Q
    |||||||||||| |||||||||  |||||||  ||||  |||| ||||||||||| ||||| |||| |||||||||||||||  ||||||||||||||||    
T  45421862 ggcagacttgttctctgttgatctggagcagcaggggttttttttggaggtggaggcgtagattgtcgcagtgggaggaggagatgttagcggagtgtag 45421763  T
Q  306 ggctttacttcttga 320  Q
    |||||| ||||||||    
T  45421762 ggcttttcttcttga 45421748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 173 - 320
Target Start/End: Complemental strand, 13550500 - 13550353
Alignment:
Q  173 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtg 272  Q
    |||||||||||||||||||||||| ||| |  ||||| |||||| | ||||||||||||||||||||||||| | |||||||||||||||||||||| ||    
T  13550500 tgtttgagttaacagagaataagtctatattcgtggcggacttgctttctgttgattcggagcagtggggggatgtgtggaggtggagacgtaggttatg 13550401  T
Q  273 gcagtgggaggaggacttgttagcggagtgtagggctttacttcttga 320  Q
    ||||||||| ||||||||| ||| |||||| ||||||||| |||||||    
T  13550400 gcagtgggatgaggacttgctagaggagtgcagggctttaattcttga 13550353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 173 - 320
Target Start/End: Complemental strand, 43627875 - 43627728
Alignment:
Q  173 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtg 272  Q
    |||||||||||||||||||||||| |||||  ||||| |||||| | ||| |||||||||||  ||||||||   |||||||||||||||||||||| ||    
T  43627875 tgtttgagttaacagagaataagtctatgttcgtggccgacttgctctctattgattcggagaggtggggggaggtgtggaggtggagacgtaggttatg 43627776  T
Q  273 gcagtgggaggaggacttgttagcggagtgtagggctttacttcttga 320  Q
    ||||||||||||||| ||| |||  |||||||||||||||||||||||    
T  43627775 gcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 43627728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 173 - 319
Target Start/End: Original strand, 26894376 - 26894522
Alignment:
Q  173 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtg 272  Q
    |||||||||||||||||||||||| |||||||||  | |||||| | ||||||| |||||||| |||||||    |||||||||||||||||||||| ||    
T  26894376 tgtttgagttaacagagaataagtctatgtctgtcaccgacttgctctctgttgcttcggagcggtgggggaaggtgtggaggtggagacgtaggttatg 26894475  T
Q  273 gcagtgggaggaggacttgttagcggagtgtagggctttacttcttg 319  Q
    ||||||||||||||| ||| |||  ||||||||||||||||||||||    
T  26894476 gcagtgggaggaggagttgctagatgagtgtagggctttacttcttg 26894522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 173 - 319
Target Start/End: Original strand, 26899815 - 26899961
Alignment:
Q  173 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtg 272  Q
    |||||||||||||||||||||||| |||||||||  | |||||| | ||||||| |||||||| |||||||    |||||||||||||||||||||| ||    
T  26899815 tgtttgagttaacagagaataagtctatgtctgtcaccgacttgctctctgttgcttcggagcggtgggggaaggtgtggaggtggagacgtaggttatg 26899914  T
Q  273 gcagtgggaggaggacttgttagcggagtgtagggctttacttcttg 319  Q
    ||||||||||||||| ||| |||  ||||||||||||||||||||||    
T  26899915 gcagtgggaggaggagttgctagatgagtgtagggctttacttcttg 26899961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 224 - 320
Target Start/End: Original strand, 31085452 - 31085548
Alignment:
Q  224 ttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttga 320  Q
    ||||||| ||||||||||||| | |||||||||||||| | |||||||| ||||||||||||||  ||||||| |||||||||||||||||||||||    
T  31085452 ttgattcagagcagtggggggatgtgtggaggtggagatgcaggttgtgacagtgggaggaggagctgttagcagagtgtagggctttacttcttga 31085548  T

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Target: chr2; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 224 - 320
Target Start/End: Complemental strand, 33548197 - 33548101
Alignment:
Q  224 ttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttga 320  Q
    |||||||||||| ||||||||   |||||||||||||||||||||| ||||||||||||||||| ||| |||  |||||||||||||||||||||||    
T  33548197 ttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 33548101  T

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Target: chr2; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 173 - 244
Target Start/End: Complemental strand, 13550953 - 13550882
Alignment:
Q  173 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtgggggg 244  Q
    |||||||||||||||||||||||| ||| |  ||||| |||||| | |||||||||||||||||||||||||    
T  13550953 tgtttgagttaacagagaataagtctatattcgtggcggacttgctttctgttgattcggagcagtgggggg 13550882  T

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Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 265 - 320
Target Start/End: Complemental strand, 22052911 - 22052856
Alignment:
Q  265 aggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttga 320  Q
    ||||| ||||||||||||||||| ||| ||| ||||||||||||||||||||||||    
T  22052911 aggttatggcagtgggaggaggagttgctagaggagtgtagggctttacttcttga 22052856  T

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Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 265 - 314
Target Start/End: Complemental strand, 36804196 - 36804147
Alignment:
Q  265 aggttgtggcagtgggaggaggacttgttagcggagtgtagggctttact 314  Q
    |||||||||  |||||||||||||||||||| ||||||||||||||||||    
T  36804196 aggttgtgggcgtgggaggaggacttgttagaggagtgtagggctttact 36804147  T

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Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 276 - 314
Target Start/End: Complemental strand, 36804400 - 36804362
Alignment:
Q  276 gtgggaggaggacttgttagcggagtgtagggctttact 314  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  36804400 gtgggaggaggacttgttagaggagtgtagggctttact 36804362  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 312
Target Start/End: Complemental strand, 40176941 - 40176905
Alignment:
Q  276 gtgggaggaggacttgttagcggagtgtagggcttta 312  Q
    |||||||||||||||| ||| ||||||||||||||||    
T  40176941 gtgggaggaggacttggtagaggagtgtagggcttta 40176905  T

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Target: scaffold0418 (Bit Score: 101; Significance: 5e-50; HSPs: 2)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 136 - 320
Target Start/End: Complemental strand, 8088 - 7904
Alignment:
Q  136 ttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagc 235  Q
    |||||||||||||| || ||||||||||| |||||  |||||||||||| |||||||||| | |||||| ||||||||||||| |||||||||| |||||    
T  8088 ttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaatagagaataagctcatgtctatggcagacttgttctctgttgatttggagc 7989  T
Q  236 agtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttga 320  Q
    ||  |||| |||| ||||||||||| ||||| ||||||||||||||||||||  |||||| |||||||| |||||||||||||||    
T  7988 agcaggggtttttttggaggtggaggcgtagattgtggcagtgggaggaggagatgttagtggagtgtatggctttacttcttga 7904  T

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Target: scaffold0418; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 8149 - 8093
Alignment:
Q  5 gtttcgtgttggtggagggaggtgagtcgtcttaaggatagtgttggtgagggggagt 62  Q
    ||||||||||||||| |||||||||||||| ||| |||||||| ||||||||| ||||    
T  8149 gtttcgtgttggtgg-gggaggtgagtcgtattagggatagtggtggtgagggtgagt 8093  T

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Target: scaffold0131 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 5 - 197
Target Start/End: Original strand, 4144 - 4337
Alignment:
Q  5 gtttcgtgttggtggagggaggtgagtcgtcttaaggatagtgttggtgagggggagtgtggg-ggtttgtcggccacgtggctaggagggttggagatg 103  Q
    |||||||| ||||||||||||||||||||| ||| || ||||| |||||| || ||| | ||  ||||||| |  || |||||| |||||||||||||||    
T  4144 gtttcgtggtggtggagggaggtgagtcgtattaggggtagtgatggtgatggagagagcggttggtttgttgatcatgtggctcggagggttggagatg 4243  T
Q  104 gttctgatacgttgttttggttggatagggagttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtt 197  Q
    |  || |||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  4244 gagctcatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgttttcgtaggctgtttgagttaatagagaataagtt 4337  T

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Target: chr6 (Bit Score: 96; Significance: 5e-47; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 173 - 320
Target Start/End: Complemental strand, 25318230 - 25318083
Alignment:
Q  173 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtg 272  Q
    |||||||||||||| |||||||||||||||| ||||| |||||| |||||||||||||  ||| |||||||| |||||||||||||| ||||||||| ||    
T  25318230 tgtttgagttaacaaagaataagtttatgtccgtggcggacttgctatctgttgattcaaagcggtggggggatttgtggaggtggatacgtaggttatg 25318131  T
Q  273 gcagtgggaggaggacttgttagcggagtgtagggctttacttcttga 320  Q
    ||||||||||||||| ||| ||| ||||||||||||||||||||||||    
T  25318130 gcagtgggaggaggagttgctagaggagtgtagggctttacttcttga 25318083  T

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Target: chr6; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 173 - 320
Target Start/End: Complemental strand, 26205724 - 26205577
Alignment:
Q  173 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtg 272  Q
    |||||||||||||| |||||||||||||||| ||||| |||||| |||||||||||||  ||| |||||||| |||||||||||||| ||||||||| ||    
T  26205724 tgtttgagttaacaaagaataagtttatgtccgtggcggacttgctatctgttgattcaaagcggtggggggatttgtggaggtggatacgtaggttatg 26205625  T
Q  273 gcagtgggaggaggacttgttagcggagtgtagggctttacttcttga 320  Q
    ||||||||||||||| ||| ||| ||||||||||||||||||||||||    
T  26205624 gcagtgggaggaggagttgctagaggagtgtagggctttacttcttga 26205577  T

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Target: chr6; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 173 - 320
Target Start/End: Original strand, 23347231 - 23347378
Alignment:
Q  173 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtg 272  Q
    |||||||||||||||||||||||| |||||| || || |||||| | |||||||||||||||| ||||||||   |||||||||||||||||||||| ||    
T  23347231 tgtttgagttaacagagaataagtctatgtccgtcgccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatg 23347330  T
Q  273 gcagtgggaggaggacttgttagcggagtgtagggctttacttcttga 320  Q
    ||||||||||||||| ||| |||  |||||||||||||||||||||||    
T  23347331 gcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 23347378  T

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Target: chr6; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 173 - 320
Target Start/End: Complemental strand, 15674205 - 15674054
Alignment:
Q  173 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtgggg----ggttttgtggaggtggagacgtaggt 268  Q
    ||||||||||||| |||||||||| |||||||||||| |||||  | ||||||||||| ||||  |||||    ||   |||||||||||||||||||||    
T  15674205 tgtttgagttaacggagaataagtctatgtctgtggccgacttactctctgttgattcagagcgttggggccggggaggtgtggaggtggagacgtaggt 15674106  T
Q  269 tgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttga 320  Q
    ||||||||||||||||||| ||| |||  ||||| |||||||||||||||||    
T  15674105 tgtggcagtgggaggaggagttgctagatgagtgcagggctttacttcttga 15674054  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 268 - 312
Target Start/End: Complemental strand, 33630378 - 33630334
Alignment:
Q  268 ttgtggcagtgggaggaggacttgttagcggagtgtagggcttta 312  Q
    ||||||||||||||||||||  |||||||||||||||||||||||    
T  33630378 ttgtggcagtgggaggaggagatgttagcggagtgtagggcttta 33630334  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 249 - 312
Target Start/End: Complemental strand, 4474998 - 4474935
Alignment:
Q  249 gtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggcttta 312  Q
    |||||||||||||||||||||||||  |||||||||| | || |||| ||||| |||| |||||    
T  4474998 gtggaggtggagacgtaggttgtgggcgtgggaggagaatttattagaggagtttaggacttta 4474935  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 320
Target Start/End: Complemental strand, 1683299 - 1683269
Alignment:
Q  290 tgttagcggagtgtagggctttacttcttga 320  Q
    |||||||||||||||||||||||||||||||    
T  1683299 tgttagcggagtgtagggctttacttcttga 1683269  T

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Target: scaffold0112 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 314
Target Start/End: Original strand, 15490 - 15555
Alignment:
Q  249 gtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttact 314  Q
    |||||||||| | || || ||||||  ||||||||||||  |||||| ||||||||||||||||||    
T  15490 gtggaggtggcgtcgcagattgtgggcgtgggaggaggatatgttagaggagtgtagggctttact 15555  T

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