View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_183 (Length: 319)
Name: NF10145A_low_183
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_183 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 5 - 205
Target Start/End: Complemental strand, 34093069 - 34092869
Alignment:
| Q |
5 |
atgagatggacatcatcacatatacctaacctaatgcctcttcttcatttttctagctaccaatgtctttttcatctttgaattaatatatgctctaata |
104 |
Q |
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| T |
34093069 |
atgaggtggacatcatcacatttacctaacctaatgcctcttcttcatttttctagctaccaatgtctttttcatctttgaattaatatatgctctaata |
34092970 |
T |
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| Q |
105 |
gccaacgataatgatttgcatacaatgtaattgtttcttttatttcaagtggttgtgtatatataatgtgagatttgtttagccaattattcaatatcaa |
204 |
Q |
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| T |
34092969 |
gccaacgataatgatttgcatacaatgtaattgtttcttttatttcaagtggttgtgtatatataatgtgagatttgttttgccaattattcaatatcaa |
34092870 |
T |
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| Q |
205 |
t |
205 |
Q |
| |
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| |
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| T |
34092869 |
t |
34092869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 201 - 319
Target Start/End: Original strand, 34092662 - 34092780
Alignment:
| Q |
201 |
tcaataataatattgataggttaatcatctttattcatgggttcgaacatgaaacttcaacgtttcgtattatttggatcaccattatcattttgtctgc |
300 |
Q |
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||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
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| T |
34092662 |
tcaataataatattgataggttaatcacctttattcataggttcgaacatgaaacttcaacgtttcgtattatttggatcaccataatcatttcgtctgc |
34092761 |
T |
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| Q |
301 |
aaacaaaaataaaaagaaa |
319 |
Q |
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||||||||||||||||||| |
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| T |
34092762 |
aaacaaaaataaaaagaaa |
34092780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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