View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_187 (Length: 318)
Name: NF10145A_low_187
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_187 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 5 - 318
Target Start/End: Complemental strand, 34093069 - 34092756
Alignment:
| Q |
5 |
atgagatggacatcatcacatatacctaacctaatgcctcttcttcatttttctagctaccaatgtctttttcatctttgaattaatatatgctctaata |
104 |
Q |
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| T |
34093069 |
atgaggtggacatcatcacatttacctaacctaatgcctcttcttcatttttctagctaccaatgtctttttcatctttgaattaatatatgctctaata |
34092970 |
T |
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| Q |
105 |
gccaacgataatgatttgcatacaatgtaattgtttcttttatttcaagtggttgtgtatatataatgtgagatttgtttagccaattattcaatatcaa |
204 |
Q |
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| T |
34092969 |
gccaacgataatgatttgcatacaatgtaattgtttcttttatttcaagtggttgtgtatatataatgtgagatttgttttgccaattattcaatatcaa |
34092870 |
T |
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| Q |
205 |
tctgactttggcaaagtttctcattgagaaaagtcctaatcatgtatttnnnnnnnnnnnnnnnnnnngtttatgaagagttatatctctttctttttat |
304 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
34092869 |
tctgactttggcaaagtttcttattgagaaaagtcctaatcatgtatttaaaaactaaaaataaaaaagtttatgaagagttatatctctttctttttat |
34092770 |
T |
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| Q |
305 |
ttttgtttgcagac |
318 |
Q |
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|||||||||||||| |
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| T |
34092769 |
ttttgtttgcagac |
34092756 |
T |
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