View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10145A_low_188 (Length: 318)
Name: NF10145A_low_188
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_188 |
 | |
|
| [»] scaffold0159 (1 HSPs) |
| | |
|
| [»] scaffold0380 (2 HSPs) |
| | |
|
| [»] scaffold0036 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 16 - 313
Target Start/End: Complemental strand, 49953272 - 49952974
Alignment:
| Q |
16 |
gacatcattctcacttgtgtggttgttttttctacaatgtt-cgaatcacacaagtgttgtctcccccgtaagtcccaacggtgatatcatatacacttc |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
49953272 |
gacatcattctcacttgtgtggttgttttttctgcaatgtttcgaatcacacaagtgttgtctcccccgtaagtcccaacggtgatatcatatacgcttc |
49953173 |
T |
|
| Q |
115 |
aacatttttggggagcggaagtgcttcgtggtggtggatcacagacacgaagagtctcatgtttaattgagagatgttaatgtgtcaactgtggattaaa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
49953172 |
aacatttttggggagcggaagtgcttcgtggtggtggatcacggacacgaagagtctcatatttaattgagagatgttaatgtgtcaagtgtggattaaa |
49953073 |
T |
|
| Q |
215 |
ataacacattgaatgccatataatagatattgaacaatatataagtgagatgacttgtaatgtcataagattatggatgtaactttgatgtccatctca |
313 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| | ||||| |||||| |
|
|
| T |
49953072 |
ataacacattgaatggcatataatagatattgaacaatatataagtgagatgacttataatgtcataagattttggatgtaactgttatgtcaatctca |
49952974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 16 - 313
Target Start/End: Original strand, 39974683 - 39974981
Alignment:
| Q |
16 |
gacatcattctcacttgtgtggttgttttttctacaatgt-tcgaatcacacaagtgttgtctcccccgtaagtcccaacggtgatatcatatacacttc |
114 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||| |
|
|
| T |
39974683 |
gacatcattctcacctgtgtggttgttttttctgcaatgtgtcgaatcacacaagtgttgtctcccccgtaagttccaatggtgatatcatatacgcttc |
39974782 |
T |
|
| Q |
115 |
aacatttttggggagcggaagtgcttcgtggtggtggatcacagacacgaagagtctcatgtttaattgagagatgttaatgtgtcaactgtggattaaa |
214 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| | ||||| |||||| || | ||||||||||||||| ||||||||||| ||||| ||||| |
|
|
| T |
39974783 |
aacatttttggggagtggaagtgcttcgtggtggtggatcgcggacacaaagagtatcgtatttaattgagagatggtaatgtgtcaagtgtgggttaaa |
39974882 |
T |
|
| Q |
215 |
ataacacattgaatgccatataatagatattgaacaatatataagtgagatgacttgtaatgtcataagattatggatgtaactttgatgtccatctca |
313 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| || |||| |||| |||||| |||| || ||||||| || |||||||| ||||||| |||||| |
|
|
| T |
39974883 |
ataacatattgaatgccatataatagatattgaataacatatcagtggaatgactcataatctcttaagattttgaatgtaactgtgatgtcaatctca |
39974981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 69 - 315
Target Start/End: Original strand, 281813 - 282059
Alignment:
| Q |
69 |
gtgttgtctcccccgtaagtcccaacggtgatatcatatacacttcaacatttttggggagcggaagtgcttcgtggtggtggatcacagacacgaagag |
168 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||| | ||||||||||| |
|
|
| T |
281813 |
gtgttgtctcccccgtaagtcccaatggtgatatcatatacgcttcaacatttttgtggagcggaagtgctgtgtggtggtggatcgcggacacgaagag |
281912 |
T |
|
| Q |
169 |
tctcatgtttaattgagagatgttaatgtgtcaactgtggattaaaataacacattgaatgccatataatagatattgaacaatatataagtgagatgac |
268 |
Q |
| |
|
|||| | ||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||| ||||||||||| |||| ||||||||||| |
|
|
| T |
281913 |
tctcgtatttaattgagagatgttaatgtgtcaagtgtgggttaaaataacacattgaattccatataatatatattgaacaacatattagtgagatgac |
282012 |
T |
|
| Q |
269 |
ttgtaatgtcataagattatggatgtaactttgatgtccatctcatt |
315 |
Q |
| |
|
| ||||||| | ||||| ||||||||||| ||||||| |||||||| |
|
|
| T |
282013 |
tcataatgtcttgagattttggatgtaactgtgatgtcaatctcatt |
282059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 17 - 269
Target Start/End: Original strand, 13228533 - 13228783
Alignment:
| Q |
17 |
acatcattctcacttgtgtggttgttttttctacaatgt-tcgaatcacacaagtgttgtctcccccgtaagtcccaacggtgatatcatatacacttca |
115 |
Q |
| |
|
|||||||| ||||||||||| ||| | ||||| ||||| | || |||||||||||||| |||||| ||||| ||| ||||||||||||| | ||||| |
|
|
| T |
13228533 |
acatcattttcacttgtgtgattgctctttctgcaatgcgttgattcacacaagtgttggctcccca-taagtttcaatggtgatatcatatccgcttca |
13228631 |
T |
|
| Q |
116 |
acatttttggggagcggaagtgcttcgtggtggtggatcacagacacgaagagtctcatgtttaattgagagatgttaatgtgtcaactgtggattaaaa |
215 |
Q |
| |
|
||||||||||||||| ||||| || |||||||||||| ||||||| || |||||||| ||||| |||||||||||||||||||| |||| |||||| |
|
|
| T |
13228632 |
acatttttggggagcataagtggtttttggtggtggatcgcagacacaaaaagtctcatacttaatggagagatgttaatgtgtcaagtgtgagttaaaa |
13228731 |
T |
|
| Q |
216 |
taacacattgaatgccatataatagatattgaacaatatataagtgagatgact |
269 |
Q |
| |
|
||||||||||||||| ||| ||||| |||| || ||||||||||||||||| |
|
|
| T |
13228732 |
taacacattgaatgc--aatagtagatgttgagaaacatataagtgagatgact |
13228783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 42757706 - 42757638
Alignment:
| Q |
135 |
gtgcttcgtggtggtggatcacagacacgaagagtctcatgtttaattgagagatgttaatgtgtcaactgtg |
207 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||| |||| |
|
|
| T |
42757706 |
gtgcttcttggtggtggatcacagacacggagagtctc----ttaatagagagatgttaatgtgtcaattgtg |
42757638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 281775 - 281814
Alignment:
| Q |
16 |
gacatcattctcacttgtgtggttgttttttctacaatgt |
55 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
281775 |
gacatcattctcacttgtgtggttgttttttctgcaatgt |
281814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 107
Target Start/End: Original strand, 50814634 - 50814725
Alignment:
| Q |
17 |
acatcattctcacttgtgtggttgttttttctacaatgt-tcgaatcacacaagtgttgtctcccccgtaagtcccaacggtgatatcatat |
107 |
Q |
| |
|
|||||||| ||||| ||||| ||| | ||| | |||||| |||| ||||||||| |||| ||||||| |||||||||| ||||||||||||| |
|
|
| T |
50814634 |
acatcattatcactcgtgtgattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccataagtcccaatggtgatatcatat |
50814725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 171; Significance: 8e-92; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 16 - 313
Target Start/End: Complemental strand, 21589082 - 21588784
Alignment:
| Q |
16 |
gacatcattctcacttgtgtggttgttttttctacaatgt-tcgaatcacacaagtgttgtctcccccgtaagtcccaacggtgatatcatatacacttc |
114 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||| |
|
|
| T |
21589082 |
gacatcattctcacctgtgtggttgttttttctgcaatgtgtcgaatcacacaagtgttgtctcccccgtaagttccaatggtgatatcatatacgcttc |
21588983 |
T |
|
| Q |
115 |
aacatttttggggagcggaagtgcttcgtggtggtggatcacagacacgaagagtctcatgtttaattgagagatgttaatgtgtcaactgtggattaaa |
214 |
Q |
| |
|
|||| || ||||||||| |||||||||||||||||||||| |||||||||||| || | ||||||||||||||| ||||||||||| |||| ||||| |
|
|
| T |
21588982 |
aacaattatggggagcgaaagtgcttcgtggtggtggatcgtggacacgaagagtatcgtatttaattgagagatggtaatgtgtcaagggtgggttaaa |
21588883 |
T |
|
| Q |
215 |
ataacacattgaatgccatataatagatattgaacaatatataagtgagatgacttgtaatgtcataagattatggatgtaactttgatgtccatctca |
313 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| || |||| |||||||||||| |||| || ||||||| || |||||||| ||||||| |||||| |
|
|
| T |
21588882 |
ataacacattgaatgtcatataatagatattgaataacatatcagtgagatgactcataatctcttaagattttgaatgtaactgtgatgtcaatctca |
21588784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 17 - 230
Target Start/End: Original strand, 13756376 - 13756590
Alignment:
| Q |
17 |
acatcattctcacttgtgtggttgttttttctacaatgt-tcgaatcacacaagtgttgtctcccccgtaagtcccaacggtgatatcatatacacttca |
115 |
Q |
| |
|
|||||||| ||||||||||| ||| | ||||| |||||| |||| ||||||||| |||| || || | |||||||||| ||||||||||||| ||||| |
|
|
| T |
13756376 |
acatcattatcacttgtgtgattgctctttctgcaatgtgtcgattcacacaagcgttggcttccacataagtcccaatggtgatatcatatctgcttca |
13756475 |
T |
|
| Q |
116 |
acatttttggggagcggaagtgcttcgtggtggtggatcacagacacgaagagtctcatgtttaattgagagatgttaatgtgtcaactgtggattaaaa |
215 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||||| ||| || |||||||||||| ||||| ||| ||||||||||||||| |||| |||||| |
|
|
| T |
13756476 |
acatttttggggagcggaagtggtccgtggtggtggatagtagatacaaagagtctcatgcttaatatagatatgttaatgtgtcaagtgtgagttaaaa |
13756575 |
T |
|
| Q |
216 |
taacacattgaatgc |
230 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
13756576 |
taacacattgaatgc |
13756590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 16 - 230
Target Start/End: Complemental strand, 42797532 - 42797318
Alignment:
| Q |
16 |
gacatcattctcacttgtgtggttgttttttctacaatgt-tcgaatcacacaagtgttgtctcccccgtaagtcccaacggtgatatcatatacacttc |
114 |
Q |
| |
|
||||||||| ||||| ||||| ||| | ||||| |||||| |||| ||||||||||||| |||| | ||||||| ||| ||||||||||||| |||| |
|
|
| T |
42797532 |
gacatcattatcactcgtgtgattgctctttctgcaatgtgtcgattcacacaagtgtttgctcctc-gtaagtctcaatggtgatatcatatctgcttc |
42797434 |
T |
|
| Q |
115 |
aacatttttggggagcggaagtgcttcgtggtggtggatcacagacacgaagagtctcatgtttaattgagagatgttaatgtgtcaactgtggattaaa |
214 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||| |||| || ||||||||||| ||||| || ||||||||||||||||| |||| ||||| |
|
|
| T |
42797433 |
aacatttttggggagcggaagtggtctgtggtggtggatagcagatacagagagtctcatgcttaatagaaagatgttaatgtgtcaagtgtgagttaaa |
42797334 |
T |
|
| Q |
215 |
ataacacattgaatgc |
230 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
42797333 |
ataacacattgaatgc |
42797318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 17 - 230
Target Start/End: Complemental strand, 23142042 - 23141828
Alignment:
| Q |
17 |
acatcattctcacttgtgtggttgttttttctacaatgt-tcgaatcacacaagtgttgtctcccccgtaagtcccaacggtgatatcatatacacttca |
115 |
Q |
| |
|
|||||||| ||||| ||||| ||| | ||| | |||||| |||| ||||||||| |||| ||||||| |||||| ||| ||||||||||||| ||||| |
|
|
| T |
23142042 |
acatcattatcactcgtgtgattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccataagtctcaatggtgatatcatatctgcttca |
23141943 |
T |
|
| Q |
116 |
acatttttggggagcggaagtgcttcgtggtggtggatcacagacacgaagagtctcatgtttaattgagagatgttaatgtgtcaactgtggattaaaa |
215 |
Q |
| |
|
||||||| |||||||||||||| | ||||||||||||| |||| || ||||||||||| ||||| |||||||||||| ||||||| | || |||||| |
|
|
| T |
23141942 |
acattttcggggagcggaagtggtccgtggtggtggatagcagatacagagagtctcatgcttaatagagagatgttaacgtgtcaagtatgagttaaaa |
23141843 |
T |
|
| Q |
216 |
taacacattgaatgc |
230 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
23141842 |
taacacattgaatgc |
23141828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 230
Target Start/End: Complemental strand, 10901546 - 10901475
Alignment:
| Q |
159 |
acacgaagagtctcatgtttaattgagagatgttaatgtgtcaactgtggattaaaataacacattgaatgc |
230 |
Q |
| |
|
||||| |||||||| | ||||| ||||||||||||||| |||| |||| ||||||||||||||||||||| |
|
|
| T |
10901546 |
acacggagagtctcgtacttaatggagagatgttaatgtatcaaatgtgagttaaaataacacattgaatgc |
10901475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 167; Significance: 2e-89; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 16 - 313
Target Start/End: Original strand, 36095949 - 36096247
Alignment:
| Q |
16 |
gacatcattctcacttgtgtggttgttttttctacaatgt-tcgaatcacacaagtgttgtctcccccgtaagtcccaacggtgatatcatatacacttc |
114 |
Q |
| |
|
|||||||||||||| | |||||||||||||||| |||||| |||||||||||||||||||| ||||||||| ||||||| ||||||||||||||| |||| |
|
|
| T |
36095949 |
gacatcattctcacctttgtggttgttttttctgcaatgtgtcgaatcacacaagtgttgtatcccccgtatgtcccaatggtgatatcatatacgcttc |
36096048 |
T |
|
| Q |
115 |
aacatttttggggagcggaagtgcttcgtggtggtggatcacagacacgaagagtctcatgtttaattgagagatgttaatgtgtcaactgtggattaaa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | |||||||||||| || | |||||||||||||| ||||||||||| ||||| ||||| |
|
|
| T |
36096049 |
aacatttttggggagcggaagtgcttcgtggtggtggatcgcggacacgaagagtatcgtatttaattgagagattgtaatgtgtcaagtgtgggttaaa |
36096148 |
T |
|
| Q |
215 |
ataacacattgaatgccatataatagatattgaacaatatataagtgagatgacttgtaatgtcataagattatggatgtaactttgatgtccatctca |
313 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||| || |||| | |||||||||| |||| || ||||||| || |||||||| |||||| |||||| |
|
|
| T |
36096149 |
ataatacattgaatgccatataattgatattgaataacatatcaatgagatgactcataatctcttaagattttgaatgtaactgcgatgtcaatctca |
36096247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 16 - 154
Target Start/End: Complemental strand, 12746241 - 12746103
Alignment:
| Q |
16 |
gacatcattctcacttgtgtggttgttttttctacaatgt-tcgaatcacacaagtgttgtctcccccgtaagtcccaacggtgatatcatatacacttc |
114 |
Q |
| |
|
||||||||||||||||||||| ||| || | || |||||| |||||||||||||||||||||||||| |||| |||||| ||||||||||||||| |||| |
|
|
| T |
12746241 |
gacatcattctcacttgtgtgattgcttct-ctgcaatgtatcgaatcacacaagtgttgtctcccctgtaattcccaatggtgatatcatatacgcttc |
12746143 |
T |
|
| Q |
115 |
aacatttttggggagcggaagtgcttcgtggtggtggatc |
154 |
Q |
| |
|
||||||||||| |||||||| ||||| ||||||||||||| |
|
|
| T |
12746142 |
aacatttttggagagcggaaatgctttgtggtggtggatc |
12746103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 165 - 269
Target Start/End: Complemental strand, 50332056 - 50331954
Alignment:
| Q |
165 |
agagtctcatgtttaattgagagatgttaatgtgtcaactgtggattaaaataacacattgaatgccatataatagatattgaacaatatataagtgaga |
264 |
Q |
| |
|
||||| ||||| ||||| |||||||||||||||||||| |||| ||||||||||||||||||||| ||| ||||| |||| || |||||||||||| |
|
|
| T |
50332056 |
agagtttcatgcttaatagagagatgttaatgtgtcaagtgtgagttaaaataacacattgaatgc--aatagtagatgttgagaaacatataagtgaga |
50331959 |
T |
|
| Q |
265 |
tgact |
269 |
Q |
| |
|
||||| |
|
|
| T |
50331958 |
tgact |
50331954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 126
Target Start/End: Complemental strand, 50332173 - 50332063
Alignment:
| Q |
17 |
acatcattctcacttgtgtggttgttttttctacaatgtt-cgaatcacacaagtgttgtctcccccgtaagtcccaacggtgatatcatatacacttca |
115 |
Q |
| |
|
|||||||| ||||| ||||| ||| | ||||| |||||| ||| ||||||||| |||| ||||||| |||||||||| ||||||||||||| ||||| |
|
|
| T |
50332173 |
acatcattatcactcgtgtgattgctctttctgcaatgtgacgattcacacaagcgttggctcccccataagtcccaatggtgatatcatatctgcttca |
50332074 |
T |
|
| Q |
116 |
acatttttggg |
126 |
Q |
| |
|
||||||||||| |
|
|
| T |
50332073 |
acatttttggg |
50332063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0159 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: scaffold0159
Description:
Target: scaffold0159; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 17 - 269
Target Start/End: Complemental strand, 33492 - 33240
Alignment:
| Q |
17 |
acatcattctcacttgtgtggttgttttttctacaatgt-tcg--aatcacacaagtgttgtctcccccgtaagtcccaacggtgatatcatatacactt |
113 |
Q |
| |
|
|||||||||||||||||||| ||| | ||||| |||||| || | |||||||||||||| |||||| |||||| ||| | |||||||||| | ||| |
|
|
| T |
33492 |
acatcattctcacttgtgtgattgctctttctgcaatgtgtcatcattcacacaagtgttggctcccca-taagtctcaatgttgatatcatacccgctt |
33394 |
T |
|
| Q |
114 |
caacatttttggggagcggaagtgcttcgtggtggtggatcacagacacgaagagtctcatgtttaattgagagatgttaatgtgtcaactgtggattaa |
213 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||||| ||||||| |||||||||| ||||| ||||||||||||||||||| |||| |||| |
|
|
| T |
33393 |
caacatttttgggaagcggaagtggttcgtggtggtggatcgcagacacagagagtctcatacttaatgaagagatgttaatgtgtcaaatgtgagttaa |
33294 |
T |
|
| Q |
214 |
aataacacattgaatgccatataatagatattgaacaatatataagtgagatgact |
269 |
Q |
| |
|
||||||||||||||||| ||| ||||| |||||||| ||||||||||||||||| |
|
|
| T |
33293 |
aataacacattgaatgc--aatagtagatgttgaacaacatataagtgagatgact |
33240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 98; Significance: 3e-48; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 17 - 269
Target Start/End: Complemental strand, 5789119 - 5788867
Alignment:
| Q |
17 |
acatcattctcacttgtgtggttgttttttctacaatgt-tcg--aatcacacaagtgttgtctcccccgtaagtcccaacggtgatatcatatacactt |
113 |
Q |
| |
|
|||||||||||||||||||| ||| | ||||| |||||| || | |||||||||||||| |||||| |||||| ||| | |||||||||| | ||| |
|
|
| T |
5789119 |
acatcattctcacttgtgtgattgctctttctgcaatgtgtcatcattcacacaagtgttggctcccca-taagtctcaatgttgatatcatacccgctt |
5789021 |
T |
|
| Q |
114 |
caacatttttggggagcggaagtgcttcgtggtggtggatcacagacacgaagagtctcatgtttaattgagagatgttaatgtgtcaactgtggattaa |
213 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||||| ||||||| |||||||||| ||||| ||||||||||||||||||| |||| |||| |
|
|
| T |
5789020 |
caacatttttgggaagcggaagtggttcgtggtggtggatcgcagacacagagagtctcatacttaatgaagagatgttaatgtgtcaaatgtgagttaa |
5788921 |
T |
|
| Q |
214 |
aataacacattgaatgccatataatagatattgaacaatatataagtgagatgact |
269 |
Q |
| |
|
||||||||||||||||| ||| ||||| |||||||| ||||||||||||||||| |
|
|
| T |
5788920 |
aataacacattgaatgc--aatagtagatgttgaacaacatataagtgagatgact |
5788867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 17 - 269
Target Start/End: Complemental strand, 3395698 - 3395448
Alignment:
| Q |
17 |
acatcattctcacttgtgtggttgttttttctacaatgt-tcgaatcacacaagtgttgtctcccccgtaagtcccaacggtgatatcatatacacttca |
115 |
Q |
| |
|
|||||||| ||||||||||| ||| | ||||| ||| || |||| ||||||||||||||||||||| ||||| |||| ||||||||||||| | ||||| |
|
|
| T |
3395698 |
acatcattttcacttgtgtgattgctctttctgcaacgtgtcgattcacacaagtgttgtctcccca-taagttccaatggtgatatcatatccgcttca |
3395600 |
T |
|
| Q |
116 |
acatttttggggagcggaagtgcttcgtggtggtggatcacagacacgaagagtctcatgtttaattgagagatgttaatgtgtcaactgtggattaaaa |
215 |
Q |
| |
|
||||||||||||||| ||||| || |||||||||||| ||||||| ||||||||||| ||||| ||||||||||||||||||| |||| |||||| |
|
|
| T |
3395599 |
acatttttggggagcataagtggtttttggtggtggatcgcagacacaaagagtctcatacttaatggagagatgttaatgtgtcaggtgtgagttaaaa |
3395500 |
T |
|
| Q |
216 |
taacacattgaatgccatataatagatattgaacaatatataagtgagatgact |
269 |
Q |
| |
|
|||||| |||||||| ||| ||||| |||| || ||||||||||||||||| |
|
|
| T |
3395499 |
taacactttgaatgc--aatagtagatgttgagaaacatataagtgagatgact |
3395448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 41754620 - 41754529
Alignment:
| Q |
17 |
acatcattctcacttgtgtggttgttttttctacaatgt-tcgaatcacacaagtgttgtctcccccgtaagtcccaacggtgatatcatat |
107 |
Q |
| |
|
|||||||| ||||| ||||| ||| | ||| | |||||| |||| ||||||||| |||| ||||||| |||||||||| ||||||||||||| |
|
|
| T |
41754620 |
acatcattatcactcgtgtgattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccataagtcccaatggtgatatcatat |
41754529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 96; Significance: 5e-47; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 44 - 269
Target Start/End: Original strand, 1599549 - 1599773
Alignment:
| Q |
44 |
tttctacaatgt-tcgaatcacacaagtgttgtctcccccgtaagtcccaacggtgatatcatatacacttcaacatttttggggagcggaagtgcttcg |
142 |
Q |
| |
|
||||| |||||| |||| |||||||||| ||| ||||||| |||||||||| |||||||||||||| ||||||||||||| ||||||||||||| | | |
|
|
| T |
1599549 |
tttctgcaatgtgtcgattcacacaagtattggctcccccataagtcccaaaggtgatatcatatatgcttcaacattttttgggagcggaagtggtatg |
1599648 |
T |
|
| Q |
143 |
tggtggtggatcacagacacgaagagtctcatgtttaattgagagatgttaatgtgtcaactgtggattaaaataacacattgaatgccatataatagat |
242 |
Q |
| |
|
||||||||||| |||| || ||||||||||| ||||| |||||||||||||||||||| |||| ||||||||||||||||||||| ||| ||||| |
|
|
| T |
1599649 |
tggtggtggatagcagatacagagagtctcatgcttaatagagagatgttaatgtgtcaagtgtgagttaaaataacacattgaatgc--aatagtagat |
1599746 |
T |
|
| Q |
243 |
attgaacaatatataagtgagatgact |
269 |
Q |
| |
|
|||| || ||||||||||||||||| |
|
|
| T |
1599747 |
gttgagaaacatataagtgagatgact |
1599773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 61 - 230
Target Start/End: Original strand, 26894788 - 26894957
Alignment:
| Q |
61 |
tcacacaagtgttgtctcccccgtaagtcccaacggtgatatcatatacacttcaacatttttggggagcggaagtgcttcgtggtggtggatcacagac |
160 |
Q |
| |
|
|||||||| ||||| || |||| |||||||||| |||||| |||| |||||||||||||| |||||| ||||||| ||| ||||||||||| ||||| |
|
|
| T |
26894788 |
tcacacaactgttggctaccccataagtcccaataatgatataatatccacttcaacattttaggggagtggaagtggttcatggtggtggattgcagac |
26894887 |
T |
|
| Q |
161 |
acgaagagtctcatgtttaattgagagatgttaatgtgtcaactgtggattaaaataacacattgaatgc |
230 |
Q |
| |
|
||| | |||||||| ||||| ||||||||||||| | |||| |||| |||||||||||||||| |||| |
|
|
| T |
26894888 |
acggatagtctcatacttaatggagagatgttaatatatcaagtgtgatttaaaataacacattggatgc |
26894957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 16 - 137
Target Start/End: Complemental strand, 33014122 - 33014000
Alignment:
| Q |
16 |
gacatcattctcacttgtgtggttgttttttctacaatgt-tcgaatcacacaagtgttgtctcccccgtaagtcccaacggtgatatcatatacacttc |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||| |
|
|
| T |
33014122 |
gacatcattctcacttgtgtggttgttttttctgcaatgtgtcgaatcacacaagtgttgtctcccatgtaagtcccaatggtgatatcatatacgcttc |
33014023 |
T |
|
| Q |
115 |
aacatttttggggagcggaagtg |
137 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
33014022 |
aacatttttggggagcggaagtg |
33014000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 17 - 269
Target Start/End: Complemental strand, 38016177 - 38015928
Alignment:
| Q |
17 |
acatcattctcacttgtgtggttgttttttctacaatgt-tcgaatcacacaagtgttgtctcccccgtaagtcccaacggtgatatcatatacacttca |
115 |
Q |
| |
|
|||||||| | ||||||||| ||| | ||||| |||| | |||| ||||||||||| || |||||| |||||||||| || |||||||||| | ||||| |
|
|
| T |
38016177 |
acatcattattacttgtgtgattgctctttctgcaatatatcgattcacacaagtgctggctcccca-taagtcccaatggcgatatcatatccgcttca |
38016079 |
T |
|
| Q |
116 |
acatttttggggagcggaagtgcttcgtggtggtggatcacagacacgaagagtctcatgtttaattgagagatgttaatgtgtcaactgtggattaaaa |
215 |
Q |
| |
|
||||||||| ||| |||||||| |||||||||||||||| ||||| || |||||||| || || |||||||||||||||||||| |||| |||||| |
|
|
| T |
38016078 |
acatttttgtggaacggaagtggttcgtggtggtggatcgtggacac-aaaagtctcatacttgatggagagatgttaatgtgtcaagtgtgagttaaaa |
38015980 |
T |
|
| Q |
216 |
taacacattgaatgccatataatagatattgaacaatatataagtgagatgact |
269 |
Q |
| |
|
||||||||||||||| ||| ||||| |||| ||| ||||||||||||||||| |
|
|
| T |
38015979 |
taacacattgaatgc--aatagtagatgttgagcaacatataagtgagatgact |
38015928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 176 - 313
Target Start/End: Complemental strand, 33013989 - 33013852
Alignment:
| Q |
176 |
tttaattgagagatgttaatgtgtcaactgtggattaaaataacacattgaatgccatataatagatattgaacaatatataagtgagatgacttgtaat |
275 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||| ||||||||||||||||||| ||||||||| ||||||||||| |||| |||||||||||| |||| |
|
|
| T |
33013989 |
tttaattgagagatgctaatgtgtcaagtgtgggttaaaataacacattgaatttcatataatatatattgaacaacatattagtgagatgactcataat |
33013890 |
T |
|
| Q |
276 |
gtcataagattatggatgtaactttgatgtccatctca |
313 |
Q |
| |
|
||| ||||| ||||||||| | ||||||| |||||| |
|
|
| T |
33013889 |
gtcttaagaacttggatgtaattgtgatgtcaatctca |
33013852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 17 - 230
Target Start/End: Complemental strand, 43387344 - 43387132
Alignment:
| Q |
17 |
acatcattctcacttgtgtggttgttttttctacaatgt-tcgaatcacacaagtgttgtctcccccgtaagtcccaacggtgatatcatatacacttca |
115 |
Q |
| |
|
|||| ||| ||||||||||| ||| |||||||||| ||| || | |||||||||||||| ||||| |||||||||| ||||||||||||| | |||| |
|
|
| T |
43387344 |
acattattttcacttgtgtgattgctttttctacattgtgtcaattcacacaagtgttggatcccca-taagtcccaatggtgatatcatatccgtttca |
43387246 |
T |
|
| Q |
116 |
acatttttggggagcggaagtgcttcgtggtggtggatcacagacacgaagagtctcatgtttaattgagagatgttaatgtgtcaactgtggattaaaa |
215 |
Q |
| |
|
|||||||| |||||| ||||| ||||||||| |||||| |||||||| |||||||| | |||| |||||||||||||||||||| |||| |||||| |
|
|
| T |
43387245 |
acattttttgggagcaaaagtggttcgtggtg-tggatcgcagacacggagagtctcgtacttaacagagagatgttaatgtgtcaagtgtgagttaaaa |
43387147 |
T |
|
| Q |
216 |
taacacattgaatgc |
230 |
Q |
| |
|
| ||||||||||||| |
|
|
| T |
43387146 |
ttacacattgaatgc |
43387132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0380 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: scaffold0380
Description:
Target: scaffold0380; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 24 - 153
Target Start/End: Original strand, 14373 - 14503
Alignment:
| Q |
24 |
tctcacttgtgtggttgttttttctacaatgt-tcgaatcacacaagtgttgtctcccccgtaagtcccaacggtgatatcatatacacttcaacatttt |
122 |
Q |
| |
|
||||||||||||| ||| ||||| |||||| | || |||||||||||||| |||| || |||||| || ||||||||||||| | |||||||||||| |
|
|
| T |
14373 |
tctcacttgtgtgattgccctttcttcaatgtgttgattcacacaagtgttggctcctccataagtcttaatggtgatatcatatccgcttcaacatttt |
14472 |
T |
|
| Q |
123 |
tggggagcggaagtgcttcgtggtggtggat |
153 |
Q |
| |
|
|| |||||||| ||| |||||| |||||||| |
|
|
| T |
14473 |
tgaggagcggatgtggttcgtgatggtggat |
14503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0380; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 269
Target Start/End: Original strand, 14538 - 14595
Alignment:
| Q |
210 |
ttaaaataacacattgaatgccatataatagatattgaacaatatataagtgagatgact |
269 |
Q |
| |
|
||||||||||||||||||||| ||| ||||| |||||||| |||||| |||||||||| |
|
|
| T |
14538 |
ttaaaataacacattgaatgc--aatagtagatgttgaacaacatataaatgagatgact |
14595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 230
Target Start/End: Complemental strand, 50384 - 50251
Alignment:
| Q |
97 |
tgatatcatatacacttcaacatttttggggagcggaagtgcttcgtggtggtggatcacagacacgaagagtctcatgtttaattgagagatgttaatg |
196 |
Q |
| |
|
||||||||||| | ||||||| ||||| |||||| |||||| ||||| |||||||||| | |||| |||||||| | ||||| |||||| ||||| |
|
|
| T |
50384 |
tgatatcatatccgcttcaacgttttttgggagcagaagtggttcgtagtggtggatcgcggacatagagagtctcgtacttaatggagagaatttaata |
50285 |
T |
|
| Q |
197 |
tgtcaactgtggattaaaataacacattgaatgc |
230 |
Q |
| |
|
|||||| ||| |||||||||||| |||||||| |
|
|
| T |
50284 |
tgtcaagtgtcagttaaaataacacgttgaatgc |
50251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 202
Target Start/End: Complemental strand, 17510369 - 17510279
Alignment:
| Q |
112 |
ttcaacatttttggggagcggaagtgcttcgtggtggtggatcacagacacgaagagtctcatgtttaattgagagatgttaatgtgtcaa |
202 |
Q |
| |
|
||||||||||| |||||| || |||| ||| ||||||| |||||||| ||| |||||||| | ||| | |||||||||||||||||||| |
|
|
| T |
17510369 |
ttcaacattttaggggagtgggagtggttcttggtggtcgatcacaggcacaaagagtctgacacttactggagagatgttaatgtgtcaa |
17510279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 202
Target Start/End: Original strand, 17542845 - 17542935
Alignment:
| Q |
112 |
ttcaacatttttggggagcggaagtgcttcgtggtggtggatcacagacacgaagagtctcatgtttaattgagagatgttaatgtgtcaa |
202 |
Q |
| |
|
||||||||||| |||||| || |||| ||| ||||||| |||||||| ||| |||||||| | ||| | |||||||||||||||||||| |
|
|
| T |
17542845 |
ttcaacattttaggggagtgggagtggttcttggtggtcgatcacaggcacaaagagtctgacacttactggagagatgttaatgtgtcaa |
17542935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 202
Target Start/End: Complemental strand, 17474885 - 17474795
Alignment:
| Q |
112 |
ttcaacatttttggggagcggaagtgcttcgtggtggtggatcacagacacgaagagtctcatgtttaattgagagatgttaatgtgtcaa |
202 |
Q |
| |
|
||||||||||| |||| | || |||| ||| ||||||| |||||||| ||| |||||||| | ||| | |||||||||||||||||||| |
|
|
| T |
17474885 |
ttcaacattttaggggtgtgggagtggttcttggtggtcgatcacaggcacaaagagtctgacacttactggagagatgttaatgtgtcaa |
17474795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 202
Target Start/End: Original strand, 17578329 - 17578419
Alignment:
| Q |
112 |
ttcaacatttttggggagcggaagtgcttcgtggtggtggatcacagacacgaagagtctcatgtttaattgagagatgttaatgtgtcaa |
202 |
Q |
| |
|
||||||||||| |||| | || |||| ||| ||||||| |||||||| ||| |||||||| | ||| | |||||||||||||||||||| |
|
|
| T |
17578329 |
ttcaacattttaggggtgtgggagtggttcttggtggtcgatcacaggcacaaagagtctgacacttactggagagatgttaatgtgtcaa |
17578419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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