View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_19 (Length: 458)

Name: NF10145A_low_19
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_19
NF10145A_low_19
[»] scaffold0774 (5 HSPs)
scaffold0774 (144-387)||(3078-3308)
scaffold0774 (40-118)||(2915-2993)
scaffold0774 (387-436)||(3700-3749)
scaffold0774 (113-144)||(3033-3064)
scaffold0774 (15-43)||(2828-2856)
[»] scaffold0442 (2 HSPs)
scaffold0442 (394-458)||(9863-9927)
scaffold0442 (342-386)||(10358-10403)


Alignment Details
Target: scaffold0774 (Bit Score: 174; Significance: 2e-93; HSPs: 5)
Name: scaffold0774
Description:

Target: scaffold0774; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 144 - 387
Target Start/End: Original strand, 3078 - 3308
Alignment:
Q  144 gtggtggtggagagagagaatggaggaccacgaccagaactcctatcaggactaggactgcttccgctaggctgctgctacaaggtgaaagtggagaatg 243  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||    
T  3078 gtggtggtggagtaagagaatggaggaccacgaccagaactcctatcaggactaggactgc--------------tgctacaaggtgaaagtggagaatg 3163  T
Q  244 agtgtgatcagaatatatgcactttttaaatctgtcttttgggttaccatttccattcaatgctattccctctattttcaagattctctcgtagtacatt 343  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  3164 agtgtgatcagaatatatgcactttttaaatctgtcttttgggttaccatttccattcaatgctattccctctattttcaagattctctcggtgtacatt 3263  T
Q  344 attataagagtctaaaggacacggtcaa-gaatgtactataccag 387  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  3264 attataagagtctaaaggacacggtcaatgaatgtactataccag 3308  T

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Target: scaffold0774; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 40 - 118
Target Start/End: Original strand, 2915 - 2993
Alignment:
Q  40 aatgtgtatgttaaaaatagtgtttcagacctttctcgtttgttaaatactcaaggttgtagaaacaacttgttaatta 118  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  2915 aatgtgtatgttaaaaatagtgtttcagacctttcttgttttttaaatactcaaggttgtagaaacaacttgttaatta 2993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0774; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 387 - 436
Target Start/End: Original strand, 3700 - 3749
Alignment:
Q  387 gaatataagagagaaaattgtcacaataatcgaacaaatatcatttctca 436  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  3700 gaatatgagagagaaaattgtcacaataatcgaacaaatatcatttctca 3749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0774; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 144
Target Start/End: Original strand, 3033 - 3064
Alignment:
Q  113 taattactccttgatgatatataatgaaaatg 144  Q
    ||||||||||||||||||||||||||||||||    
T  3033 taattactccttgatgatatataatgaaaatg 3064  T

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Target: scaffold0774; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 43
Target Start/End: Original strand, 2828 - 2856
Alignment:
Q  15 atgaatgtaagtcgtgaactttagaaatg 43  Q
    |||||||||||||||||||||||||||||    
T  2828 atgaatgtaagtcgtgaactttagaaatg 2856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0442 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: scaffold0442
Description:

Target: scaffold0442; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 394 - 458
Target Start/End: Complemental strand, 9927 - 9863
Alignment:
Q  394 agagagaaaattgtcacaataatcgaacaaatatcatttctcatacaattattccaataatgtga 458  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9927 agagataaagttgtcacaataatcgaacaaatatcatttctcatacaattattccaataatgtga 9863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0442; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 342 - 386
Target Start/End: Complemental strand, 10403 - 10358
Alignment:
Q  342 ttattataagagtctaaaggacacggtcaa-gaatgtactatacca 386  Q
    |||||||||||||||||||||||||||||| | |||||||||||||    
T  10403 ttattataagagtctaaaggacacggtcaatggatgtactatacca 10358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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