View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_190 (Length: 318)
Name: NF10145A_low_190
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_190 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 4 - 318
Target Start/End: Original strand, 40660370 - 40660678
Alignment:
| Q |
4 |
gggtcgaagaagctggagaacaatgaaaccatagctccatccatgttagaactagttgcggtgcggtgcaccataaaccttnnnnnnnnnnnnnnnnnnn |
103 |
Q |
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| T |
40660370 |
gggtcgaagaagctggagaacgatgaaaccatagctccatccatgttagaactagttgcagtgcggtacaccataaaccttaaaaaaaaaaaaaaaaaa- |
40660468 |
T |
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| Q |
104 |
ctgtgccaaggtgctgtttccacttagacagcaccaaaccaaaccaaaccaaatattgagctaaatccagaataatctgcacttctatttccccttgagt |
203 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40660469 |
ctgtgccaaggtgctgtttccacttagacagcacca-----aaccaaaccaaatattgagctaaatccagaataatctgcacttctatttccccttgagt |
40660563 |
T |
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| Q |
204 |
aacttgctcgaaatcaaataacaaagacgaccacaatcaagtagacaaaaagtagcagactggcctcattaacatgtgcttcatgcttaattgcaatcat |
303 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40660564 |
aacttgctcgaaatcaaataacaaagacaaccacaatcaagtggacaaaaagtagcagactggcctcattaacatgtgcttcatgcttaattgcaatcat |
40660663 |
T |
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| Q |
304 |
aacaaatgtacatga |
318 |
Q |
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||||||||||||||| |
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| T |
40660664 |
aacaaatgtacatga |
40660678 |
T |
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