View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_195 (Length: 315)

Name: NF10145A_low_195
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_195
NF10145A_low_195
[»] chr3 (6 HSPs)
chr3 (9-312)||(19199133-19199437)
chr3 (77-287)||(6777837-6778048)
chr3 (86-302)||(1596237-1596454)
chr3 (86-302)||(34437781-34437997)
chr3 (26-73)||(34437674-34437721)
chr3 (202-291)||(21565966-21566054)
[»] chr1 (8 HSPs)
chr1 (81-304)||(43782700-43782924)
chr1 (86-302)||(48999827-49000044)
chr1 (81-302)||(45152677-45152899)
chr1 (162-302)||(40553596-40553736)
chr1 (77-293)||(3375894-3376110)
chr1 (162-291)||(33297214-33297343)
chr1 (21-73)||(45152954-45153005)
chr1 (25-75)||(3375795-3375845)
[»] scaffold0018 (1 HSPs)
scaffold0018 (81-304)||(180324-180548)
[»] chr7 (3 HSPs)
chr7 (83-302)||(12627421-12627641)
chr7 (76-304)||(1326840-1327069)
chr7 (162-293)||(38457493-38457624)
[»] chr5 (9 HSPs)
chr5 (83-266)||(26653528-26653712)
chr5 (83-266)||(26925113-26925297)
chr5 (86-292)||(13274093-13274300)
chr5 (162-302)||(2742997-2743137)
chr5 (162-218)||(21101423-21101479)
chr5 (9-73)||(26653769-26653833)
chr5 (9-73)||(26925354-26925418)
chr5 (170-291)||(24209211-24209332)
chr5 (18-73)||(21101616-21101672)
[»] chr8 (3 HSPs)
chr8 (77-302)||(37227721-37227947)
chr8 (147-293)||(14096700-14096846)
chr8 (26-73)||(37227623-37227670)
[»] chr2 (4 HSPs)
chr2 (77-293)||(31116886-31117103)
chr2 (183-312)||(28035637-28035766)
chr2 (26-73)||(28035925-28035972)
chr2 (15-73)||(31116777-31116835)
[»] chr4 (11 HSPs)
chr4 (171-293)||(25147344-25147466)
chr4 (86-302)||(42705139-42705356)
chr4 (162-303)||(39465347-39465486)
chr4 (26-81)||(3681088-3681143)
chr4 (26-73)||(25147612-25147659)
chr4 (26-73)||(32305590-32305637)
chr4 (26-73)||(39465623-39465670)
chr4 (196-302)||(32307880-32307986)
chr4 (209-302)||(3680825-3680918)
chr4 (162-199)||(32305774-32305811)
chr4 (29-73)||(42705035-42705079)
[»] scaffold0251 (2 HSPs)
scaffold0251 (82-293)||(16977-17192)
scaffold0251 (26-73)||(16875-16922)
[»] scaffold0408 (1 HSPs)
scaffold0408 (147-293)||(7042-7188)
[»] chr6 (3 HSPs)
chr6 (162-302)||(6285814-6285954)
chr6 (149-266)||(35014337-35014454)
chr6 (201-291)||(2029728-2029818)
[»] scaffold0007 (1 HSPs)
scaffold0007 (162-233)||(257345-257416)
[»] scaffold0010 (1 HSPs)
scaffold0010 (193-291)||(32353-32451)


Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 9 - 312
Target Start/End: Complemental strand, 19199437 - 19199133
Alignment:
Q  9 gatggacatcaactgtgtagtcaggaatggacgcatggaggttcataataggatgtgatactctacaaaactagatcacccctctcctgctggctgaggg 108  Q
    ||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||     
T  19199437 gatgggcatcaactgtgtagtcaggaatggacgcaggggggttcataataggatgtgatactctacaaaaatagatcacccctctcctactggctgagga 19199338  T
Q  109 catgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcctgggaatagtctagacatactcgtactg 207  Q
    ||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||| ||| | |||||||| ||||||    
T  19199337 catgtagagcaaactctgcgaaggccataaccacgtcccctgccgtaagaggcccaatgtttgtaggaggcctgggaacagtttggacatactagtactg 19199238  T
Q  208 cctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcatatgtcctgaaaggacgtaatgtcttgt 307  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||| || |||||||||||||||| ||    
T  19199237 cctaagaacccactctggcaagtgacataccctcttgtatttgccggccatgatccatccggagcactagcatatgttctaaaaggacgtaatgtctcgt 19199138  T
Q  308 tgtct 312  Q
    |||||    
T  19199137 tgtct 19199133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 77 - 287
Target Start/End: Complemental strand, 6778048 - 6777837
Alignment:
Q  77 aactagatcacccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtagga 175  Q
    |||| |||||||||||| ||| ||||||||| ||||||||| |||||| | |||||||   || |||||  |||||| || | || ||||||||||||||    
T  6778048 aactggatcacccctctgctgatggctgaggacatgtagagcaaactccgtgaaggcctgggccacgtcatctgccgcaataagctcaatgtctgtagga 6777949  T
Q  176 ggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtact 275  Q
    | |||  ||||||||| ||||||| |||||||||||| ||||| || | |||||||||  ||| || |||  ||| |||||||||||||||  ||| ||     
T  6777948 gccctcagaatagtctggacatacccgtactgcctaagaaccctctctagcaagtgacggaccatcctgtcgttgtcggccatgatccatccggagcacc 6777849  T
Q  276 agcatatgtcct 287  Q
    ||||||||||||    
T  6777848 agcatatgtcct 6777837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 86 - 302
Target Start/End: Original strand, 1596237 - 1596454
Alignment:
Q  86 acccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcctggga 184  Q
    |||||||| ||| ||| ||||| ||||||||| ||||||   |||||||   || |||||  |||||| || | || ||||||||||||||| |||  ||    
T  1596237 acccctctgctgatgggtgaggacatgtagagcaaactccatgaaggcctgggccacgtcatctgccgcaataagctcaatgtctgtaggagccctcaga 1596336  T
Q  185 atagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcatatgt 284  Q
    ||||||| |||||||  ||||||||||| ||||| || |||||||||||  ||| || |||   ||| ||||||||||||||  |||||| |||||||||    
T  1596337 atagtctggacatacctgtactgcctaagaacccgctttggcaagtgacggaccatcctgtcgctgctggccatgatccatccggagtaccagcatatgt 1596436  T
Q  285 cctgaaaggacgtaatgt 302  Q
    ||||||||| ||| ||||    
T  1596437 cctgaaagggcgtgatgt 1596454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 86 - 302
Target Start/End: Original strand, 34437781 - 34437997
Alignment:
Q  86 acccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcctggga 184  Q
    |||||| ||||| ||||||||| ||||||||| |||||| | |||| || | || |||||  | |||| || | || ||||||| ||||||| |||||||    
T  34437781 acccctatcctgatggctgaggacatgtagagcaaactccgtgaagacc-tggccacgtcatccgccgcaataagctcaatgtcagtaggagccctggga 34437879  T
Q  185 atagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcatatgt 284  Q
    |||||||  |||||| |||||||||||| ||||| || ||| || ||||  ||| || ||    | ||| ||||||||||||  |||||| |||||||||    
T  34437880 atagtctgtacatacccgtactgcctaagaacccgctctggaaattgacggaccatcctgccactaccgaccatgatccatccggagtaccagcatatgt 34437979  T
Q  285 cctgaaaggacgtaatgt 302  Q
    ||||||||| ||| ||||    
T  34437980 cctgaaagggcgtgatgt 34437997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 73
Target Start/End: Original strand, 34437674 - 34437721
Alignment:
Q  26 tagtcaggaatggacgcatggaggttcataataggatgtgatactcta 73  Q
    ||||||||||||| |||| ||||||||| |||||||||||||||||||    
T  34437674 tagtcaggaatgggcgcagggaggttcacaataggatgtgatactcta 34437721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 291
Target Start/End: Complemental strand, 21566054 - 21565966
Alignment:
Q  202 gtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcatatgtcctgaaa 291  Q
    ||||||||| | ||||| ||  ||||||||||| ||| |||| | |||| ||||||||||||||| ||||||| |||| | |||||||||    
T  21566054 gtactgcctcagaacccgctcgggcaagtgacacaccatcttttgtttgtcggccatgatccatccagagtac-agcacacgtcctgaaa 21565966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 121; Significance: 5e-62; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 81 - 304
Target Start/End: Original strand, 43782700 - 43782924
Alignment:
Q  81 agatcacccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcc 179  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||   | |||||||||| ||||||| || || |||||||||||||||||||||||||     
T  43782700 agatcacccctctcctgctggctgaggacatgtagagcaaactccatggaggccatagccacgtcccttgacgcaagaggcccaatgtctgtaggaggca 43782799  T
Q  180 tgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagca 279  Q
    |||| ||||||| |||||||||||| ||||||| ||| | || |||||||||||| |||||| ||| ||||||| |||||||||||| ||||||||||||    
T  43782800 tgggtatagtctggacatactcgtattgcctaagaactcgctctggcaagtgacagaccctcatgtctttgccgaccatgatccatccagagtactagca 43782899  T
Q  280 tatgtcctgaaaggacgtaatgtct 304  Q
    |||||| ||||||| ||||||||||    
T  43782900 tatgtcgtgaaagggcgtaatgtct 43782924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 86 - 302
Target Start/End: Complemental strand, 49000044 - 48999827
Alignment:
Q  86 acccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcctggga 184  Q
    |||||| ||||| ||||||||| ||||||||| |||||| | |||||||  ||| |||||  | |||| || | || ||||||||||||||| |||||||    
T  49000044 acccctatcctgatggctgaggacatgtagagcaaactccgtgaaggcctgagccacgtcatccgccgcaataagctcaatgtctgtaggagccctggga 48999945  T
Q  185 atagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcatatgt 284  Q
    ||||||||||||||| |||||||||||| ||||| || |||||||||||  ||| || |||  |||||||||||||||||||  |||||| |||||||||    
T  48999944 atagtctagacatacccgtactgcctaagaacccgctctggcaagtgacggaccatcctgtcgttgccggccatgatccatccggagtaccagcatatgt 48999845  T
Q  285 cctgaaaggacgtaatgt 302  Q
    ||||||||| ||| ||||    
T  48999844 cctgaaagggcgtgatgt 48999827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 81 - 302
Target Start/End: Complemental strand, 45152899 - 45152677
Alignment:
Q  81 agatcacccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcc 179  Q
    ||||||||| ||||| | ||||||||  ||||||||| ||||||   |||||||||||| || ||| ||| || |||||||||||||||||||||| |||    
T  45152899 agatcacccatctccagttggctgagaacatgtagagcaaactccatgaaggccatagccacatccgctgtcgcaagaggcccaatgtctgtaggatgcc 45152800  T
Q  180 tgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagca 279  Q
    | |||| ||||| ||||||| || ||||||||| ||||| || | |||||| |   |||| | ||| ||||||||||||||||||||| |||||| | ||    
T  45152799 taggaacagtctggacatacccgaactgcctaagaacccgctctagcaagtaatgaacccgcatgtctttgccggccatgatccatctggagtaccaaca 45152700  T
Q  280 tatgtcctgaaaggacgtaatgt 302  Q
    |||||||||||||| ||| ||||    
T  45152699 tatgtcctgaaagggcgtgatgt 45152677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 162 - 302
Target Start/End: Original strand, 40553596 - 40553736
Alignment:
Q  162 caatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgat 261  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| || |||||||||||  ||| || |||   |||||||||||||    
T  40553596 caatgtctgtaggagccctgggaatagtctggacatactcgtactgcctaagaacccgctctggcaagtgacggaccatcctgtcgctgccggccatgat 40553695  T
Q  262 ccatctagagtactagcatatgtcctgaaaggacgtaatgt 302  Q
    |||||  |||||| |||||||||| ||||||| ||| ||||    
T  40553696 ccatccggagtaccagcatatgtcatgaaagggcgtgatgt 40553736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 77 - 293
Target Start/End: Original strand, 3375894 - 3376110
Alignment:
Q  77 aactagatcacccctctcctgctggctgagggcatgtagagaaa-ctctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtagga 175  Q
    ||||||||||||| ||||||||||||||||| |||||||||||| |||   ||||| |||||| || ||| ||| |  |||||||||||| |||||||||    
T  3375894 aactagatcaccc-tctcctgctggctgaggacatgtagagaaaactccatgaaggtcatagccacctcctctggcacaagaggcccaatatctgtagga 3375992  T
Q  176 ggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtact 275  Q
    |  ||||||  ||||| |||||||  ||| ||||||| ||||| || |||||||||||  ||| || ||| | | ||||||||||||||||  ||||||     
T  3375993 gctctgggaccagtctggacatacatgtattgcctaagaacccgctctggcaagtgacggaccatcctgtctctaccggccatgatccatccggagtacc 3376092  T
Q  276 agcatatgtcctgaaagg 293  Q
    |  |||||||||||||||    
T  3376093 aaaatatgtcctgaaagg 3376110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 162 - 291
Target Start/End: Original strand, 33297214 - 33297343
Alignment:
Q  162 caatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgat 261  Q
    ||||||||||||||| |||||||||||||| | ||||| |||||||||||| ||||| || |||||||||||  ||| || |||   || ||||||||||    
T  33297214 caatgtctgtaggagccctgggaatagtctggtcatacccgtactgcctaagaacccgctctggcaagtgacggaccatcctgtcgctgtcggccatgat 33297313  T
Q  262 ccatctagagtactagcatatgtcctgaaa 291  Q
    |||||  |||||| ||||||||||||||||    
T  33297314 ccatccggagtaccagcatatgtcctgaaa 33297343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 45153005 - 45152954
Alignment:
Q  21 ctgtgtagtcaggaatggacgcatggaggttcataataggatgtgatactcta 73  Q
    |||||||||||||||||| |||| || |||||| |||||||||||||||||||    
T  45153005 ctgtgtagtcaggaatggccgcaggg-ggttcacaataggatgtgatactcta 45152954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 3375795 - 3375845
Alignment:
Q  25 gtagtcaggaatggacgcatggaggttcataataggatgtgatactctaca 75  Q
    |||||||||||||| |||| || |||||| ||||||||||| |||||||||    
T  3375795 gtagtcaggaatggccgcaggggggttcacaataggatgtgctactctaca 3375845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 81 - 304
Target Start/End: Original strand, 180324 - 180548
Alignment:
Q  81 agatcacccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcc 179  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||   ||||| |||||| | ||||||||||  |||||||||||||| |||||||||||    
T  180324 agatcacccctctcctgctggctgaggacatgtagagcaaactccatgaaggtcatagccatgtcccctgccacaagaggcccaatgtttgtaggaggcc 180423  T
Q  180 tgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagca 279  Q
    |||||| ||||||||||||| |||||||||||| ||||| || |||||||||||| |||||| ||| |||| |||||||||||||||  |||||| | ||    
T  180424 tgggaacagtctagacatacccgtactgcctaagaacccgctctggcaagtgacagaccctcctgtctttggcggccatgatccatccggagtaccaaca 180523  T
Q  280 tatgtcctgaaaggacgtaatgtct 304  Q
    |||||||||||||| | ||||||||    
T  180524 tatgtcctgaaagggcataatgtct 180548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 4e-38; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 83 - 302
Target Start/End: Complemental strand, 12627641 - 12627421
Alignment:
Q  83 atcacccctctcctgctggctgagggcatgtagagaaa-ctctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcctg 181  Q
    |||||||||||  || ||||||||| |||||||||||| |||   |||||||||||| ||  || ||| || || || ||||||||||||||||||||||    
T  12627641 atcacccctctgttgttggctgaggacatgtagagaaaactccatgaaggccatagccaccgcctctggcgcaacagtcccaatgtctgtaggaggcctg 12627542  T
Q  182 ggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcata 281  Q
    |||| ||||| | |||||  ||||||| ||| |||||||| |||||||||||  ||| || ||| |||||||||||||||||||||||||||| | ||||    
T  12627541 ggaacagtctgggcatacctgtactgcataagaacccactctggcaagtgacgaaccatcctgtctttgccggccatgatccatctagagtaccaccata 12627442  T
Q  282 tgtcctgaaaggacgtaatgt 302  Q
    |||||| ||||| ||| ||||    
T  12627441 tgtcctaaaagggcgtcatgt 12627421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 76 - 304
Target Start/End: Original strand, 1326840 - 1327069
Alignment:
Q  76 aaactagatcacccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtagg 174  Q
    |||| ||||||||||||||||| ||||||||| ||||||||| ||||||   ||||||| || | || ||||||| ||  ||||||||||||||||||||    
T  1326840 aaaccagatcacccctctcctgttggctgaggacatgtagagcaaactccatgaaggccgtaaccacctcccctggcgccagaggcccaatgtctgtagg 1326939  T
Q  175 aggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtac 274  Q
    |||| || ||| | | | ||||||| | |||||||||| | |||  | |||||||||||  |||||||||| | ||| ||||||||||||||  ||||||    
T  1326940 aggcatgtgaacaatttggacatacccatactgcctaaaatcccgttctggcaagtgacggaccctcttgtctctgcaggccatgatccatccggagtac 1327039  T
Q  275 tagcatatgtcctgaaaggacgtaatgtct 304  Q
     | ||||||||||||||||  |||||||||    
T  1327040 caacatatgtcctgaaagggtgtaatgtct 1327069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 162 - 293
Target Start/End: Complemental strand, 38457624 - 38457493
Alignment:
Q  162 caatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgat 261  Q
    |||||||||||||||  |||||||||||||  | |||| |||||||||||| |||| ||| |||||||||||  ||| || |||   |||||||||||||    
T  38457624 caatgtctgtaggagcgctgggaatagtctgaatatacccgtactgcctaagaaccaactctggcaagtgacggaccatcatgtcgctgccggccatgat 38457525  T
Q  262 ccatctagagtactagcatatgtcctgaaagg 293  Q
    |||||  |||||| ||||||||||||||||||    
T  38457524 ccatccggagtaccagcatatgtcctgaaagg 38457493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 6e-31; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 83 - 266
Target Start/End: Complemental strand, 26653712 - 26653528
Alignment:
Q  83 atcacccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcctg 181  Q
    ||||||||||||||||||| ||||| ||||||||| ||||||    |||| ||| || |||||  || | | |||||||||||||| ||||| ||| |||    
T  26653712 atcacccctctcctgctggttgaggacatgtagagcaaactccatcaaggtcattgccacgtcatctactgcaagaggcccaatgtatgtagaaggtctg 26653613  T
Q  182 ggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatc 266  Q
    |||||||||| ||||||| |||||||||||| |||||  | |||||||||||| ||||||| ||  |||||||||||||||||||    
T  26653612 ggaatagtctggacatacccgtactgcctaagaacccgttctggcaagtgacagaccctctagtcattgccggccatgatccatc 26653528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 83 - 266
Target Start/End: Complemental strand, 26925297 - 26925113
Alignment:
Q  83 atcacccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcctg 181  Q
    ||||||||||||||||||| ||||| ||||||||| ||||||    |||| ||| || |||||  || | | |||||||||||||| ||||| ||| |||    
T  26925297 atcacccctctcctgctggttgaggacatgtagagcaaactccatcaaggtcattgccacgtcatctactgcaagaggcccaatgtatgtagaaggtctg 26925198  T
Q  182 ggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatc 266  Q
    |||||||||| ||||||| |||||||||||| |||||  | |||||||||||| ||||||| ||  |||||||||||||||||||    
T  26925197 ggaatagtctggacatacccgtactgcctaagaacccgttctggcaagtgacagaccctctagtcattgccggccatgatccatc 26925113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 86 - 292
Target Start/End: Complemental strand, 13274300 - 13274093
Alignment:
Q  86 acccctctcctgctggctgagggcatgtagagaaa-ctctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcctggga 184  Q
    |||||| ||||| ||||||||| |||||||||||| ||||| |||||||   || |||||  |  ||| || | || ||||| ||||||||| |||||||    
T  13274300 acccctatcctgatggctgaggacatgtagagaaaactctgtgaaggcctaggccacgtcatccaccgcaataagctcaatggctgtaggagccctggga 13274201  T
Q  185 atagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcatatgt 284  Q
    ||||||| ||||||| |||||||||||| ||||| || |||||||||||  ||  || |||   ||||||||||||||||||| |||||| |||||||||    
T  13274200 atagtctggacatacccgtactgcctaagaacccgctctggcaagtgacggacaatcctgtcgctgccggccatgatccatctggagtaccagcatatgt 13274101  T
Q  285 cctgaaag 292  Q
    ||| ||||    
T  13274100 cctaaaag 13274093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 162 - 302
Target Start/End: Complemental strand, 2743137 - 2742997
Alignment:
Q  162 caatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgat 261  Q
    ||||||||||||||| |||| ||||||| | ||||||| |||||| ||||| ||||| || || |||||||   ||| || |||   |||||| ||||||    
T  2743137 caatgtctgtaggagccctgagaatagtttggacatacccgtacttcctaagaacccgctctgacaagtgatggaccatcctgtcgctgccggtcatgat 2743038  T
Q  262 ccatctagagtactagcatatgtcctgaaaggacgtaatgt 302  Q
    |||||  |||||| |||||||||||||||||| ||| ||||    
T  2743037 ccatccggagtaccagcatatgtcctgaaagggcgtgatgt 2742997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 21101479 - 21101423
Alignment:
Q  162 caatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataaccc 218  Q
    ||||||||||||||| ||| |||||||||| ||||||| |||||||||||| |||||    
T  21101479 caatgtctgtaggagccctaggaatagtctggacatacacgtactgcctaagaaccc 21101423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 26653833 - 26653769
Alignment:
Q  9 gatggacatcaactgtgtagtcaggaatggacgcatggaggttcataataggatgtgatactcta 73  Q
    ||||| ||||||||||||||||||||||||   || || |||||| |||||||||||||||||||    
T  26653833 gatgggcatcaactgtgtagtcaggaatggctacaggggggttcacaataggatgtgatactcta 26653769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 26925418 - 26925354
Alignment:
Q  9 gatggacatcaactgtgtagtcaggaatggacgcatggaggttcataataggatgtgatactcta 73  Q
    ||||| ||||||||||||||||||||||||   || || |||||| |||||||||||||||||||    
T  26925418 gatgggcatcaactgtgtagtcaggaatggctacaggggggttcacaataggatgtgatactcta 26925354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 291
Target Start/End: Original strand, 24209211 - 24209332
Alignment:
Q  170 gtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctag 269  Q
    |||||||| ||| |||| |||||| |||| ||||||||||| | ||||| || |||||||||||    | || ||| |||| ||| |||||||||||  |    
T  24209211 gtaggaggtctgtgaatggtctaggcatagtcgtactgcctcagaacccgctctggcaagtgacggcacatcctgtctttgtcggtcatgatccatccgg 24209310  T
Q  270 agtactagcatatgtcctgaaa 291  Q
    ||||| ||||||||||| ||||    
T  24209311 agtaccagcatatgtcccgaaa 24209332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 21101672 - 21101616
Alignment:
Q  18 caactgtgtagtcaggaatggacgc-atggaggttcataataggatgtgatactcta 73  Q
    ||||||||||||||||||||| ||| | || |||||| ||||||||| |||||||||    
T  21101672 caactgtgtagtcaggaatggccgcaaggggggttcacaataggatgcgatactcta 21101616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 77 - 302
Target Start/End: Original strand, 37227721 - 37227947
Alignment:
Q  77 aactagatcacccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtagga 175  Q
    |||| ||| |||||| || || ||||||||| ||||||||| |||||| | |||||||   || |||||  | |||| || | || ||||||||||||||    
T  37227721 aactggatgacccctatcttgatggctgaggacatgtagagcaaactccgtgaaggcctgggccacgtcatccgccgcaataagctcaatgtctgtagga 37227820  T
Q  176 ggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtact 275  Q
    | |||||||||||||| ||||||| |||||||||||| ||||| || ||||||||||   ||| || |||   || |||||||||||||||  |||||||    
T  37227821 gccctgggaatagtctggacatacccgtactgcctaagaacccgctctggcaagtgagggaccatcctgtcgatgtcggccatgatccatccggagtact 37227920  T
Q  276 agcatatgtcctgaaaggacgtaatgt 302  Q
    |||||||||||| ||||| ||| ||||    
T  37227921 agcatatgtcctaaaagggcgtgatgt 37227947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 147 - 293
Target Start/End: Complemental strand, 14096846 - 14096700
Alignment:
Q  147 ctgccgtaagaggcccaatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgta 246  Q
    |||||| |||| || |||||||||||||||||  ||||||||||| |||||||  ||||||||||| || || || |||||||||||  ||| |  |||     
T  14096846 ctgccgcaagaagctcaatgtctgtaggaggcaagggaatagtctggacatacctgtactgcctaagaaaccgctctggcaagtgacggaccattatgtc 14096747  T
Q  247 tttgccggccatgatccatctagagtactagcatatgtcctgaaagg 293  Q
      || |||||||||||||||| |||||||||| ||||||||||||||    
T  14096746 gctgtcggccatgatccatctggagtactagcttatgtcctgaaagg 14096700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 73
Target Start/End: Original strand, 37227623 - 37227670
Alignment:
Q  26 tagtcaggaatggacgcatggaggttcataataggatgtgatactcta 73  Q
    ||||||||||||| |||| || |||||| |||||||||||||||||||    
T  37227623 tagtcaggaatggccgcaggggggttcacaataggatgtgatactcta 37227670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 9e-27; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 77 - 293
Target Start/End: Original strand, 31116886 - 31117103
Alignment:
Q  77 aactagatcacccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtagga 175  Q
    |||| ||| |||||||| ||| ||||||||| ||||||||| |||||||  ||||| |   || |||||  ||||||||||||||  |||||||||||||    
T  31116886 aactggataacccctctgctgatggctgaggacatgtagagcaaactctatgaaggtctgggccacgtcatctgccgtaagaggcttaatgtctgtagga 31116985  T
Q  176 ggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtact 275  Q
    ||||||||    |||| ||||||| |||||||||||| |||| ||| |||||||||||| ||| || | | | || |||||||||||||||   |||||     
T  31116986 ggcctgggccgtgtctggacatacccgtactgcctaagaaccgactctggcaagtgacagaccatcctatctctgtcggccatgatccatccgaagtacc 31117085  T
Q  276 agcatatgtcctgaaagg 293  Q
    ||||||| ||||||||||    
T  31117086 agcatatatcctgaaagg 31117103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 312
Target Start/End: Complemental strand, 28035766 - 28035637
Alignment:
Q  183 gaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcatat 282  Q
    ||||||||| ||||||| | |||||||||| ||||| || | |||||||||  ||| || |||   |||||||||||||| |||  |||||| |||||||    
T  28035766 gaatagtctggacatacccctactgcctaagaacccgctctagcaagtgacggaccatcatgtcgctgccggccatgatctatccggagtaccagcatat 28035667  T
Q  283 gtcctgaaaggacgtaatgtcttgttgtct 312  Q
    ||| ||||||| ||| |||| |||| ||||    
T  28035666 gtcttgaaagggcgtgatgtgttgtcgtct 28035637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 73
Target Start/End: Complemental strand, 28035972 - 28035925
Alignment:
Q  26 tagtcaggaatggacgcatggaggttcataataggatgtgatactcta 73  Q
    ||||||||||||| ||||||| |||||| |||||||||||||||||||    
T  28035972 tagtcaggaatggccgcatgggggttcacaataggatgtgatactcta 28035925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 31116777 - 31116835
Alignment:
Q  15 catcaactgtgtagtcaggaatggacgcatggaggttcataataggatgtgatactcta 73  Q
    ||||| ||| |||||||||||||| |||| || |||||| |||||||||||||||||||    
T  31116777 catcagctgcgtagtcaggaatggccgcaggggggttcacaataggatgtgatactcta 31116835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 171 - 293
Target Start/End: Complemental strand, 25147466 - 25147344
Alignment:
Q  171 taggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctaga 270  Q
    |||||| | |||||||||||| ||||||| |||||||||||| ||||| || |||||||||||| ||| || |||   ||||||||||||||||||  ||    
T  25147466 taggagccatgggaatagtctggacatacccgtactgcctaagaacccgctctggcaagtgacagaccatcctgtcgctgccggccatgatccatccgga 25147367  T
Q  271 gtactagcatatgtcctgaaagg 293  Q
    |||| ||||||||||||||||||    
T  25147366 gtaccagcatatgtcctgaaagg 25147344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 86 - 302
Target Start/End: Original strand, 42705139 - 42705356
Alignment:
Q  86 acccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcctggga 184  Q
    |||||||| ||| ||||||||| ||||||||| |||||| | |||||||   || |||||  ||| || || | || ||||||||||||||| |||||||    
T  42705139 acccctctgctgatggctgaggacatgtagagcaaactccgtgaaggcctgggccacgtcatctgtcgcaataagctcaatgtctgtaggagccctggga 42705238  T
Q  185 atagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcatatgt 284  Q
    ||||| | ||||| | |||||||||||| ||||| || |||||||||||  ||| || |||   ||||| ||||||||||||  |||||| | |||||||    
T  42705239 atagtatggacatgcccgtactgcctaagaacccgctctggcaagtgacggaccttcatgtcgctgccgcccatgatccatccggagtaccaacatatgt 42705338  T
Q  285 cctgaaaggacgtaatgt 302  Q
    ||||||||| ||| ||||    
T  42705339 cctgaaagggcgtgatgt 42705356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 162 - 303
Target Start/End: Complemental strand, 39465486 - 39465347
Alignment:
Q  162 caatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgat 261  Q
    |||||||||||| || |||| ||||||||  ||||||| | |||||||||| ||||  || |||||||| ||  ||| || |||   |||||||||||||    
T  39465486 caatgtctgtagaagccctgagaatagtc--gacatacccatactgcctaagaaccggctctggcaagttacggaccatcctgtcgctgccggccatgat 39465389  T
Q  262 ccatctagagtactagcatatgtcctgaaaggacgtaatgtc 303  Q
    |||||  ||||||||||||||||||||||||| ||| |||||    
T  39465388 ccatccggagtactagcatatgtcctgaaagggcgtgatgtc 39465347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 3681143 - 3681088
Alignment:
Q  26 tagtcaggaatggacgcatggaggttcataataggatgtgatactctacaaaacta 81  Q
    ||||||||||||| |||| || |||||||||||||||||||||||||| |||||||    
T  3681143 tagtcaggaatggtcgcaggggggttcataataggatgtgatactctaaaaaacta 3681088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 73
Target Start/End: Complemental strand, 25147659 - 25147612
Alignment:
Q  26 tagtcaggaatggacgcatggaggttcataataggatgtgatactcta 73  Q
    ||||||||||||| |||| || |||||| |||||||||||||||||||    
T  25147659 tagtcaggaatggccgcaggggggttcacaataggatgtgatactcta 25147612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 73
Target Start/End: Original strand, 32305590 - 32305637
Alignment:
Q  26 tagtcaggaatggacgcatggaggttcataataggatgtgatactcta 73  Q
    ||||||||||||| | ||||| |||||| |||||||||||||||||||    
T  32305590 tagtcaggaatggccacatgggggttcacaataggatgtgatactcta 32305637  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 73
Target Start/End: Complemental strand, 39465670 - 39465623
Alignment:
Q  26 tagtcaggaatggacgcatggaggttcataataggatgtgatactcta 73  Q
    ||||||||||||| |||| || |||||| |||||||||||||||||||    
T  39465670 tagtcaggaatggccgcaggggggttcacaataggatgtgatactcta 39465623  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 302
Target Start/End: Original strand, 32307880 - 32307986
Alignment:
Q  196 atactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcatatgtcctgaaaggac 295  Q
    |||| |||||||||||| ||||| ||  ||||||||||  ||| || |||   || |||||||||||||||  |||||| |||||||||||| ||||| |    
T  32307880 atacccgtactgcctaagaacccgctcaggcaagtgacggaccatcctgtcgctgtcggccatgatccatccggagtaccagcatatgtcctcaaagggc 32307979  T
Q  296 gtaatgt 302  Q
    || ||||    
T  32307980 gtgatgt 32307986  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 302
Target Start/End: Complemental strand, 3680918 - 3680825
Alignment:
Q  209 ctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcatatgtcctgaaaggacgtaatgt 302  Q
    |||| ||||| || |||||||||||  ||| ||||||   ||||||||||||||||||  ||||||||| || |||||| ||||| ||| ||||    
T  3680918 ctaagaacccgctctggcaagtgacggaccatcttgtcgctgccggccatgatccatccggagtactagtatgtgtcctcaaagggcgtgatgt 3680825  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 199
Target Start/End: Original strand, 32305774 - 32305811
Alignment:
Q  162 caatgtctgtaggaggcctgggaatagtctagacatac 199  Q
    ||||||||||||||| |||||||||||||| |||||||    
T  32305774 caatgtctgtaggagccctgggaatagtctggacatac 32305811  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 42705035 - 42705079
Alignment:
Q  29 tcaggaatggacgcatggaggttcataataggatgtgatactcta 73  Q
    |||||||||| |||| || |||||| |||||||||||||||||||    
T  42705035 tcaggaatggccgcaggggggttcacaataggatgtgatactcta 42705079  T

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Target: scaffold0251 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 82 - 293
Target Start/End: Original strand, 16977 - 17192
Alignment:
Q  82 gatcacccctctcctgctggctgagggcatgtagag-aaactctgcgaaggcca--tag-ctacgtcccctgccgtaagaggcccaatgtctgtaggagg 177  Q
    |||||||||||| ||| ||||||||| ||||||||| |||||||| ||||| ||  ||| | | |||  |||||| || | ||  ||||||||||||||     
T  16977 gatcacccctctactgatggctgaggacatgtagagcaaactctgtgaagggcacctaggccatgtcatctgccgcaataagctaaatgtctgtaggagc 17076  T
Q  178 cctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactag 277  Q
    ||| |||||||||| ||||||| |||||| ||||| ||||| || ||| |||||||  ||| || |||   ||| |||||||||||||| ||||||| ||    
T  17077 cctcggaatagtctggacatacccgtactacctaacaacccgctctggaaagtgacggaccatcctgtcgctgctggccatgatccatccagagtaccag 17176  T
Q  278 catatgtcctgaaagg 293  Q
    ||||||||||||||||    
T  17177 catatgtcctgaaagg 17192  T

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Target: scaffold0251; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 73
Target Start/End: Original strand, 16875 - 16922
Alignment:
Q  26 tagtcaggaatggacgcatggaggttcataataggatgtgatactcta 73  Q
    ||||||||||||| |||| || |||||| |||||||||||||||||||    
T  16875 tagtcaggaatggccgcaggggggttcacaataggatgtgatactcta 16922  T

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Target: scaffold0408 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 147 - 293
Target Start/End: Complemental strand, 7188 - 7042
Alignment:
Q  147 ctgccgtaagaggcccaatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgta 246  Q
    |||||| |||| || |||||||||||||||||  ||||||||||| |||||||  ||||||||||| || || || |||||||||||  ||| |  |||     
T  7188 ctgccgcaagaagctcaatgtctgtaggaggcaagggaatagtctggacatacctgtactgcctaagaaaccgctctggcaagtgacggaccattatgtc 7089  T
Q  247 tttgccggccatgatccatctagagtactagcatatgtcctgaaagg 293  Q
      || |||||||||||||||| |||||||||| ||||||||||||||    
T  7088 gctgtcggccatgatccatctggagtactagcttatgtcctgaaagg 7042  T

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Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 162 - 302
Target Start/End: Original strand, 6285814 - 6285954
Alignment:
Q  162 caatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgat 261  Q
    |||||||| |||||| |||||||||||||| ||||||| |||||||||||| ||||| || || ||||||||  ||| || | |   |||  ||||||||    
T  6285814 caatgtctataggagccctgggaatagtctggacatacccgtactgcctaagaacccgctctgccaagtgacggaccatcctatcgctgctagccatgat 6285913  T
Q  262 ccatctagagtactagcatatgtcctgaaaggacgtaatgt 302  Q
    |||||| |||||| |||||||||||| ||||| ||| ||||    
T  6285914 ccatctggagtaccagcatatgtcctcaaagggcgtgatgt 6285954  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 149 - 266
Target Start/End: Complemental strand, 35014454 - 35014337
Alignment:
Q  149 gccgtaagaggcccaatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatt 248  Q
    ||||||| | || |||||| |||| ||| |||| ||||||||| ||||||| |||||||||||| ||||| || |||||||||||  ||| || |||  |    
T  35014454 gccgtaataagctcaatgtatgtacgagccctgtgaatagtctggacatacccgtactgcctaagaacccgctctggcaagtgacggaccatcctgtcgt 35014355  T
Q  249 tgccggccatgatccatc 266  Q
    ||||| ||||||||||||    
T  35014354 tgccgaccatgatccatc 35014337  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 291
Target Start/End: Complemental strand, 2029818 - 2029728
Alignment:
Q  201 cgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcatatgtcctgaaa 291  Q
    |||||||||| | ||||| || |||||||||||  ||| |||| | |||||||||||||||||||| ||| ||| |||| | |||||||||    
T  2029818 cgtactgcctcagaacccgctctggcaagtgacgcaccatcttctgtttgccggccatgatccatccagaataccagcacacgtcctgaaa 2029728  T

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Target: scaffold0007 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 233
Target Start/End: Original strand, 257345 - 257416
Alignment:
Q  162 caatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgac 233  Q
    |||||||||| |||| |||| ||||||||| ||||||| |||||| ||||| ||||| || |||||||||||    
T  257345 caatgtctgtgggagccctgagaatagtctggacatacccgtactacctaagaacccgctctggcaagtgac 257416  T

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Target: scaffold0010 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 291
Target Start/End: Original strand, 32353 - 32451
Alignment:
Q  193 gacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcatatgtcctgaaa 291  Q
    |||||||  ||||| ||||| ||||| || |||||||||||  ||| || ||| | ||  ||||||||||||||| |||||| ||||||||||||||||    
T  32353 gacatacctgtactacctaagaacccgctctggcaagtgacggaccatcatgtctctgttggccatgatccatctggagtaccagcatatgtcctgaaa 32451  T

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