View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10145A_low_196 (Length: 314)
Name: NF10145A_low_196
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_196 |
 | |
|
| [»] scaffold0867 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0867 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: scaffold0867
Description:
Target: scaffold0867; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 15 - 306
Target Start/End: Complemental strand, 2759 - 2468
Alignment:
| Q |
15 |
atggacatcaggagctcgtccttgcataacatcgttgaagacatcagattggttaagcacattgatatcgttgtttgaacccgctaccccaaagaatgcg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2759 |
atggacatcaggagctcgtccttgcataacatcgttgaagacatcagattggttaagcacattgatatcgttgtttgaacccgctaccccaaagaatgcg |
2660 |
T |
|
| Q |
115 |
tgccaaatccataagtcttgtgaagcaactgcttcaagcataaccgcgggtttaccatgatcacctcgaacatattgccctttcaatgcaactgggcaat |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2659 |
tgccaaatccataagtcttgtgaagcaactgcttcaagcataaccgtgggtttaccatgatcacctcgaacatattgccctttcaatgcaactgggcaat |
2560 |
T |
|
| Q |
215 |
ttttccattcccaatgcatacaatcaatactccccaacatacctggaaaacctcgtgcctcccccatctgcaacaagcgttcgatgtcttct |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2559 |
ttttccattcccaatgcatacaatcaatactccccaacatacctggaaaaccgcgtgcctcccccatctgcaacaagcgttcgatgtcttct |
2468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 15 - 286
Target Start/End: Complemental strand, 9681564 - 9681293
Alignment:
| Q |
15 |
atggacatcaggagctcgtccttgcataacatcgttgaagacatcagattggttaagcacattgatatcgttgtttgaacccgctaccccaaagaatgcg |
114 |
Q |
| |
|
|||||| ||||||||||| || |||||||||| |||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9681564 |
atggacctcaggagctcgcccctgcataacattgttgaagacatcaggttggttcaacacattgatatcgttgtttgaacccgctaccccaaagaatgcg |
9681465 |
T |
|
| Q |
115 |
tgccaaatccataagtcttgtgaagcaactgcttcaagcataaccgcgggtttaccatgatcacctcgaacatattgccctttcaatgcaactgggcaat |
214 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
9681464 |
tgccaaatccataggtcttgtgaagcaactgcttcaagcataacagtgggtttaccatgatcacctcgaacatattgcccttttcatgcaactgggcaat |
9681365 |
T |
|
| Q |
215 |
ttttccattcccaatgcatacaatcaatactccccaacatacctggaaaacctcgtgcctcccccatctgca |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
9681364 |
ttttccattcccaatgcatacaatcaatactccctagcatacctggaaaaccacgtgcctcccccatctgca |
9681293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 22 - 304
Target Start/End: Complemental strand, 5190545 - 5190260
Alignment:
| Q |
22 |
tcaggagctcgtccttgcataacatcgttgaagacatcagattggttaagcacattgatatcgttgtttgaacccgctaccccaaagaatgcgtgccaaa |
121 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||| |
|
|
| T |
5190545 |
tcagcagctcgcccttgcataacatcgttgaagacatcagattggttaagcacattgatatcgttgtttgaacccgctactccaaa-aatgtgtgccaaa |
5190447 |
T |
|
| Q |
122 |
tccataagtcttgtgaagcaactgcttcaagcataaccgcgggtttaccatgatcacctcgaacatattgccctttcaatgcaactgggcaatttttcca |
221 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| | |||||||||||||||||| |||||||||||| ||||||||||||||||| ||||| |||| |
|
|
| T |
5190446 |
tccataagtcttgtgaagcggctgcttcaagcataattgtgggtttaccatgatcaccgcgaacatattgctctttcaatgcaactgggaaatttgtcca |
5190347 |
T |
|
| Q |
222 |
ttccc----aatgcatacaatcaatactccccaacatacctggaaaacctcgtgcctcccccatctgcaacaagcgttcgatgtctt |
304 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
5190346 |
atcccaattaatgcatacaatcaatactccccaacatacctggaaaaccacgtgcctcccccatctgcaacaagcattcaatgtctt |
5190260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 55 - 243
Target Start/End: Original strand, 19730771 - 19730959
Alignment:
| Q |
55 |
acatcagattggttaagcacattgatatcgttgtttgaacccgctaccccaaagaatgcgtgccaaatccataagtcttgtgaagcaactgcttcaagca |
154 |
Q |
| |
|
|||| ||||||||| | |||||| || || ||||||||||| || | ||||| | ||| ||||||||||| ||||||||||| || | ||||||||||| |
|
|
| T |
19730771 |
acattagattggtttaacacattaatgtcattgtttgaacctgcaataccaaaaagtgcatgccaaatccacaagtcttgtgatgccattgcttcaagca |
19730870 |
T |
|
| Q |
155 |
taaccgcgggtttaccatgatcacctcgaacatattgccctttcaatgcaactgggcaatttttccattcccaatgcatacaatcaata |
243 |
Q |
| |
|
| | || ||||||||||| || ||||| | |||| |||||| | ||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
19730871 |
tgatcgttggtttaccatggtcgcctcggcaaaattggcctttccaagcaaccggacaatttttccattcccaatgcatacaatcaata |
19730959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 15 - 272
Target Start/End: Original strand, 19792153 - 19792410
Alignment:
| Q |
15 |
atggacatcaggagctcgtccttgcataacatcgttgaagacatcagattggttaagcacattgatatcgttgtttgaacccgctaccccaaagaatgcg |
114 |
Q |
| |
|
|||||| || |||||||| || |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19792153 |
atggacctcgggagctcgcccctgcataacatcgttgaagacatcagattggttcaacacattgatatcgttgtttgaacccgctaccccaaagaatgcg |
19792252 |
T |
|
| Q |
115 |
tgccaaatccataagtcttgtgaagcaactgcttcaagcataaccgcgggtttaccatgatcacctcgaacatattgccctttcaatgcaactgggcaat |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
19792253 |
tgccaaatccataagtcttgtgaagcaactgcttcaagcataacagtgggtttaccatgatcacctcgaacatattgccctttccatgcaactgggcaat |
19792352 |
T |
|
| Q |
215 |
ttttccattcccaatgcatacaatcaatactccccaacatacctggaaaacctcgtgc |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||| |
|
|
| T |
19792353 |
ttttccattcccaatgcatacaatcaatactccctagcatacctggaaaaccacgtgc |
19792410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 248
Target Start/End: Original strand, 8220023 - 8220060
Alignment:
| Q |
211 |
caatttttccattcccaatgcatacaatcaatactccc |
248 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
8220023 |
caatttttccactcccaatgcatgcaatcaatactccc |
8220060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 25 - 305
Target Start/End: Original strand, 23560909 - 23561189
Alignment:
| Q |
25 |
ggagctcgtccttgcataacatcgttgaagacatcagattggttaagcacattgatatcgttgtttgaacccgctaccccaaagaatgcgtgccaaatcc |
124 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||||||||| | ||| |||||||||||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
23560909 |
ggagctcgcccttgcataacatcattgaagacatcagattggttcaacacgttgatatcgttgtttgaaccagctaccccaaagaatgcatgccaaatcc |
23561008 |
T |
|
| Q |
125 |
ataagtcttgtgaagcaactgcttcaagcataaccgcgggtttaccatgatcacctcgaacatattgccctttcaatgcaactgggcaatttttccattc |
224 |
Q |
| |
|
||| |||||||||||||| ||| ||||||||||| | ||||||||||||||||||||||||||| |||||||||| ||| ||||| |||||||||||||| |
|
|
| T |
23561009 |
ataggtcttgtgaagcaattgcctcaagcataacagtgggtttaccatgatcacctcgaacatactgccctttcattgcgactggacaatttttccattc |
23561108 |
T |
|
| Q |
225 |
ccaatgcatacaatcaatactccccaacatacctggaaaacctcgtgcctcccccatctgcaacaagcgttcgatgtcttc |
305 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
23561109 |
ccaatgcatacaatcaatactacccaacatacctggaaaaccacgtgcctcccccatctgcaacaggcgttcgatatcttc |
23561189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 26 - 305
Target Start/End: Original strand, 48263886 - 48264167
Alignment:
| Q |
26 |
gagctcgtccttgcataacatcgttgaagacatcagattggttaagcacattgatatcgttgtttgaacccgctaccccaaagaatgcgtgccaaatcca |
125 |
Q |
| |
|
||||||| ||||||| |||||| |||||||||||||||||||| | | | ||||| |||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
48263886 |
gagctcgcccttgcacaacatcattgaagacatcagattggttcaacccgttgatttcgttgtttgaaccggctaccccaaagaatgcatgccaaatcca |
48263985 |
T |
|
| Q |
126 |
taa--gtcttgtgaagcaactgcttcaagcataaccgcgggtttaccatgatcacctcgaacatattgccctttcaatgcaactgggcaatttttccatt |
223 |
Q |
| |
|
|| |||||||||||||| ||| ||||||||||| | ||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||| |
|
|
| T |
48263986 |
tagaggtcttgtgaagcaattgcctcaagcataacagtgggtttaccatgatcacctcgaacatactgccctttcaatgcgactggacaatttttccatt |
48264085 |
T |
|
| Q |
224 |
cccaatgcatacaatcaatactccccaacatacctggaaaacctcgtgcctcccccatctgcaacaagcgttcgatgtcttc |
305 |
Q |
| |
|
||| |||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||| | ||||||| ||||| |
|
|
| T |
48264086 |
cccgatgcatacaatcaatactacccaacatacttggaaaaccacgtgcctcccccatctgcaacaggtgttcgatatcttc |
48264167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 107
Target Start/End: Complemental strand, 20216348 - 20216277
Alignment:
| Q |
36 |
ttgcataacatcgttgaagacatcagattggttaagcacattgatatcgttgtttgaacccgctaccccaaa |
107 |
Q |
| |
|
||||||||||| |||||| |||| |||||||| | |||||||||||||||||||||||||| | |||||| |
|
|
| T |
20216348 |
ttgcataacattgttgaatacattagattggtgcataacattgatatcgttgtttgaacccgccatcccaaa |
20216277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 15 - 305
Target Start/End: Original strand, 16680781 - 16681072
Alignment:
| Q |
15 |
atggacatcaggagctcgtccttgcataacatcgttgaagacatcagattggttaagcacattgatatcgttgtttgaacccgctaccccaaagaatgcg |
114 |
Q |
| |
|
|||||| ||||||||||| ||||||||| |||||||||||| |||| ||||||| |||||||||||||| || ||||||| |||||||||||||| |||| |
|
|
| T |
16680781 |
atggacgtcaggagctcgcccttgcataccatcgttgaagaaatcatattggttcagcacattgatatcattttttgaactcgctaccccaaagattgcg |
16680880 |
T |
|
| Q |
115 |
tgccaaatccataagtcttgtgaagcaactgcttcaagcataaccgcgggtttaccatgatcacctcgaacatattgccctttcaatgcaactgggcaat |
214 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||| ||||| || ||||||||||||||||||||||| |
|
|
| T |
16680881 |
tgccaaatccataattcttgtgaagcaactgcttcaagcataatagtgggtttaccatgatcacctcaaacatttttccctttcaatgcaactgggcaat |
16680980 |
T |
|
| Q |
215 |
ttttccattccc-aatgcatacaatcaatactccccaacatacctggaaaacctcgtgcctcccccatctgcaacaagcgttcgatgtcttc |
305 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||| ||| ||||||||| |
|
|
| T |
16680981 |
tttttcattcccaaatgcatacaatcaatactccccaacgtacctggaaaaccacgtgcctcccccatctgcagcaagagtttgatgtcttc |
16681072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 15 - 136
Target Start/End: Complemental strand, 46822837 - 46822716
Alignment:
| Q |
15 |
atggacatcaggagctcgtccttgcataacatcgttgaagacatcagattggttaagcacattgatatcgttgtttgaacccgctaccccaaagaatgcg |
114 |
Q |
| |
|
|||||| ||||||||||| || |||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46822837 |
atggacctcaggagctcgcccctgcataacattgttgaagacatcagattggttcaacacattgatatcgttgtttgaacccgctaccccaaagaatgcg |
46822738 |
T |
|
| Q |
115 |
tgccaaatccataagtcttgtg |
136 |
Q |
| |
|
||||||||||||| |||||||| |
|
|
| T |
46822737 |
tgccaaatccataggtcttgtg |
46822716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 35 - 263
Target Start/End: Original strand, 2952425 - 2952653
Alignment:
| Q |
35 |
cttgcataacatcgttgaagaca-tcagattggttaagcacattgatatcgttgtttgaacccgctaccccaaagaatgcgtgccaaatccataagtctt |
133 |
Q |
| |
|
||||||||||||| ||||| ||| | ||||||||| |||| |||||| ||||||||||||||||| |||||||||| || |||||| |||||||||| |
|
|
| T |
2952425 |
cttgcataacatc-ttgaaaacaattagattggttcagcatcctgatatttttgtttgaacccgctactccaaagaatgtgtaccaaattcataagtctt |
2952523 |
T |
|
| Q |
134 |
gtgaagcaactgc-ttcaagcataaccgcgggtttaccatgatcacctcgaacatattgccctttcaatgcaactgggcaatttttccattcccaatgca |
232 |
Q |
| |
|
||||||| ||| | ||| | |||||| ||||||| ||| ||||||| | |||||||||||||| || || | |||| ||| |||||| |||||| |
|
|
| T |
2952524 |
gtgaagccactactttcgaacataactttgggtttagcat-atcaccttaagcatattgccctttcgatctaaggagacaatattttcattcctaatgca |
2952622 |
T |
|
| Q |
233 |
tacaatcaatactccccaacatacctggaaa |
263 |
Q |
| |
|
|||||||||||||||| ||||||| ||||| |
|
|
| T |
2952623 |
tacaatcaatactccctcacataccaggaaa |
2952653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 103 - 242
Target Start/End: Original strand, 5313305 - 5313445
Alignment:
| Q |
103 |
ccaaagaatgcgtgccaaatccataagtcttgtgaagcaactgcttcaagcataaccgcggg-tttaccatgatcacctcgaacatattgccctttcaat |
201 |
Q |
| |
|
||||| ||||| || |||||||| ||||||||||| || ||||||||||||| | || ||| ||||||||||||||||||| | | || | | || | |
|
|
| T |
5313305 |
ccaaaaaatgcatgtcaaatccacaagtcttgtgatgccgctgcttcaagcatgatcgtgggttttaccatgatcacctcgacaaaactggcatgtccaa |
5313404 |
T |
|
| Q |
202 |
gcaactgggcaatttttccattcccaatgcatacaatcaat |
242 |
Q |
| |
|
||||| |||| | ||||||||||||||||||||||||||| |
|
|
| T |
5313405 |
gcaaccaggcactatttccattcccaatgcatacaatcaat |
5313445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 263
Target Start/End: Original strand, 29264551 - 29264600
Alignment:
| Q |
214 |
tttttccattcccaatgcatacaatcaatactccccaacatacctggaaa |
263 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
29264551 |
tttttccattcccaatgcatacaatctattgaacccaacatacctggaaa |
29264600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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