View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_197 (Length: 313)
Name: NF10145A_low_197
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_197 |
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| [»] scaffold0728 (2 HSPs) |
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Alignment Details
Target: scaffold0728 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: scaffold0728
Description:
Target: scaffold0728; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 1491 - 1796
Alignment:
| Q |
1 |
gttgttattattgattgatgtgttgcaggttaatgttgataatgtcttgtcttggatacctgatccaacagtaggctattcaattagaggggcttatcgc |
100 |
Q |
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||||||||||||||||| |||| ||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
1491 |
gttgttattattgattgttgtgctgcaggttaatgttgatgatgtctggtcttggatacctgatccagcagtaggctatacaattagaggggcttatcgc |
1590 |
T |
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| Q |
101 |
atgcttacaggtgggacgacttccattcctactgctctggtggtacatgcgtccctcctttggaggaaagatggatgttcctctaaaggtctctattttt |
200 |
Q |
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| T |
1591 |
atgcttacaggtgggacgacttccattcctactactctggtggtacctgcgtccctcctttggaggaaa----gatgttcctctaaaggtctctattttt |
1686 |
T |
|
| Q |
201 |
tggttgccgcctttttcggaacagattgcatatgaaggttaacttatttcgaagggggattattcaacaagacgctctactgtgtctaccgaatgtgggg |
300 |
Q |
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| T |
1687 |
tggttgccgcctttttcagaacagattgcatacgaaggttaatttatttcgaaggggggttattcaacaagacgctctactatgtctaccgaatgtgggg |
1786 |
T |
|
| Q |
301 |
tgattgagtc |
310 |
Q |
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|||| ||||| |
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| T |
1787 |
tgatcgagtc |
1796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0728; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 6431 - 6736
Alignment:
| Q |
1 |
gttgttattattgattgatgtgttgcaggttaatgttgataatgtcttgtcttggatacctgatccaacagtaggctattcaattagaggggcttatcgc |
100 |
Q |
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||||||||||||||||| |||| ||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
6431 |
gttgttattattgattgttgtgctgcaggttaatgttgatgatgtctggtcttggatacctgatccagcagtaggctatacaattagaggggcttatcgc |
6530 |
T |
|
| Q |
101 |
atgcttacaggtgggacgacttccattcctactgctctggtggtacatgcgtccctcctttggaggaaagatggatgttcctctaaaggtctctattttt |
200 |
Q |
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| T |
6531 |
atgcttacaggtgggacgacttccattcctactactctggtggtacctgcgtccctcctttggaggaaa----gatgttcctctaaaggtctctattttt |
6626 |
T |
|
| Q |
201 |
tggttgccgcctttttcggaacagattgcatatgaaggttaacttatttcgaagggggattattcaacaagacgctctactgtgtctaccgaatgtgggg |
300 |
Q |
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| T |
6627 |
tggttgccgcctttttcagaacagattgcatacgaaggttaatttatttcgaaggggggttattcaacaagacgctctactatgtctaccgaatgtgggg |
6726 |
T |
|
| Q |
301 |
tgattgagtc |
310 |
Q |
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|||| ||||| |
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| T |
6727 |
tgatcgagtc |
6736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 6 - 260
Target Start/End: Original strand, 17185689 - 17185938
Alignment:
| Q |
6 |
tattattgattgatgtgttgcaggttaatgttgataatgtcttgtcttggatacctgatccaacagtaggctattcaattagaggggcttatcgcatgct |
105 |
Q |
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||||||||| || |||||||||||||||||||||| |||||| ||||||||| |||||||| |||| | ||| | |||||||||||||||||| || |
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| T |
17185689 |
tattattgaatgttgtgttgcaggttaatgttgatgatgtctggtcttggattcctgatccggcagttcgttataccgttagaggggcttatcgcacgca |
17185788 |
T |
|
| Q |
106 |
tacaggtgggacgacttccattcctactgctctggtggtacatgcgtccctcctttggaggaaagatggatgttcctctaaaggtctctattttttggtt |
205 |
Q |
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|||| |||||| | || || ||| |||| ||| ||||||| ||| | ||| ||||||||||| ||||| ||||||||||||||| ||||||||| |
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| T |
17185789 |
tacaagtgggatggctcccgttcttactactccagtggtacctgcaactctcatttggaggaaa----aatgtttctctaaaggtctcta-tttttggtt |
17185883 |
T |
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| Q |
206 |
gccgcctttttcggaacagattgcatatgaaggttaacttatttcgaagggggat |
260 |
Q |
| |
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| T |
17185884 |
ggcgcctatttcataacagattgcctacgaagactaatttatttctaagggggat |
17185938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 174 - 266
Target Start/End: Complemental strand, 25090690 - 25090599
Alignment:
| Q |
174 |
gatgttcctctaaaggtctctattttttggttgccgcctttttcggaacagattgcatatgaaggttaacttatttcgaagggggattattca |
266 |
Q |
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||||| ||| |||| |||||||||||| ||||| |||||||||||||| ||||||| || || | ||| ||||||||||||||||||||||| |
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| T |
25090690 |
gatgtccctttaaaagtctctattttt-ggttggcgcctttttcggaatagattgcctaagagagctaatttatttcgaagggggattattca |
25090599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 1073819 - 1073766
Alignment:
| Q |
3 |
tgttattattgattgatgtgttgcaggttaatgttgataatgtcttgtcttgga |
56 |
Q |
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| T |
1073819 |
tgttattattgtctgttgtattgcaggttaatgttgatgatgtctggtcttgga |
1073766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 266
Target Start/End: Original strand, 16238953 - 16239043
Alignment:
| Q |
175 |
atgttcctctaaaggtctctattttttggttgccgcctttttcggaacagattgcatatgaaggttaacttatttcgaagggggattattca |
266 |
Q |
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|||||||||||||||| || |||||||||| ||||| |||||||| ||||||| |||||||| ||| |||||| || ||||||| ||||| |
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| T |
16238953 |
atgttcctctaaaggtatc-cctttttggttggcgcctctttcggaatagattgcctatgaaggctaatttatttagacgggggatcattca |
16239043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 116
Target Start/End: Original strand, 16238803 - 16238898
Alignment:
| Q |
21 |
tgttgcaggttaatgttgataatgtcttgtcttggatacctgatccaacagtaggctattcaattagaggggcttatcgcatgcttacaggtggga |
116 |
Q |
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| T |
16238803 |
tgttgcagattaatgttgatgatgtctggtcttggattcctgatccttcagttgggtacactgttaaacgggcttatcgcacgcttacatgtggga |
16238898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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