View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_198 (Length: 312)
Name: NF10145A_low_198
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_198 |
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Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 45459436 - 45459137
Alignment:
| Q |
1 |
tcaaagtagtcgaggatgacgtggatgcttaacaccttcttgatcacatccattggttttcctgagataggtgccatcccactgttatcgactgcaagaa |
100 |
Q |
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| T |
45459436 |
tcaaagtagtcgaggatgacgtggatgcttaacaccttcttgatcacatccattggttttcctgagataggtgccatcccactgttatcgactgcaagaa |
45459337 |
T |
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| Q |
101 |
ctgttatcgtttgtctcgagtttatttcggttgctagttgggtttgggtgaggtagttgctgtaactgctgtatgcagggtactgggacaatatttttgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45459336 |
ctgttatcgtttgtctcgagtttatttcggttgctagttgggtttgggtgaggtagttgctgtaactgctgtatgcagggtactgggacaatatttttgt |
45459237 |
T |
|
| Q |
201 |
tatgtcaaaacaggttatagataagggaaacaacattattattagtaaaattaagaacatcattgtcaatgaagaacatgacacacacattttgaatatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45459236 |
tatgtcaaaacaggttatagataagggaaacaacattattattagtaaaattaagaacatcattgtcaatgaagaacatgacacacacattttgaatatt |
45459137 |
T |
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