View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_200 (Length: 312)
Name: NF10145A_low_200
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_200 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 2842848 - 2842537
Alignment:
| Q |
1 |
agagattcttataagaagggaaagggagaatcnnnnnnnggaaaaggaacttgaaacttataggcaaatgagtttgacagaaagttgcgagttgcattcg |
100 |
Q |
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| T |
2842848 |
agagattcttataagaagggaaagggaaaatctttttttggaaaaggaacttgaaacttttaggcaaatgagtttgacagaaagttgcgagttgcattcg |
2842749 |
T |
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| Q |
101 |
aagtcagcagaggtgcggcttagtgaagggaaacgaagctcgccactttcatttgaaacatgtgatgatccatcacagatcgaaagtactgtacctattg |
200 |
Q |
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| T |
2842748 |
aagtcagcagaggtgcggcttagtgaatggaaacgaagctcgccactttcatttgaaacatgtgatgatccatcacagatcgaaagtactgtacttattg |
2842649 |
T |
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| Q |
201 |
ttaagcaagattgtacgaataatacagaacatgaagagttggataaaaacactgaatacaaggatcgagcatgtgatgatttgcatagctccttttatga |
300 |
Q |
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| T |
2842648 |
ttaagcaagattgtaccaataatacagaacatgaagagttggataaaaacactgaatacaaggatcgagcatgtgatgatttgcatagctccttttatga |
2842549 |
T |
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| Q |
301 |
tactgagtctga |
312 |
Q |
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| T |
2842548 |
tactgagtctga |
2842537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 2838747 - 2838683
Alignment:
| Q |
1 |
agagattcttataagaagggaaagggagaatcnnnnnnnggaaaaggaacttgaaacttataggc |
65 |
Q |
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| T |
2838747 |
agagattcttataagaagggaaaaggagaatctctttttggaaaaggaacttgaaagttataggc |
2838683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 233 - 312
Target Start/End: Complemental strand, 2838590 - 2838511
Alignment:
| Q |
233 |
gaagagttggataaaaacactgaatacaaggatcgagcatgtgatgatttgcatagctccttttatgatactgagtctga |
312 |
Q |
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| T |
2838590 |
gaagaggtggaggaaaacagtcaacacaaggatcaagcgtgcaatgatatgcatagatccttttatgatactgagtctga |
2838511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 178
Target Start/End: Complemental strand, 2838679 - 2838645
Alignment:
| Q |
144 |
cactttcatttgaaacatgtgatgatccatcacag |
178 |
Q |
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| T |
2838679 |
cactttcatttgaaacttgtgatgatccatcacag |
2838645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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