View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_202 (Length: 311)

Name: NF10145A_low_202
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_202
NF10145A_low_202
[»] chr8 (1 HSPs)
chr8 (51-215)||(42387389-42387553)
[»] chr6 (1 HSPs)
chr6 (60-215)||(3190603-3190758)
[»] chr5 (1 HSPs)
chr5 (25-62)||(1752801-1752838)
[»] chr7 (1 HSPs)
chr7 (17-57)||(43414221-43414261)


Alignment Details
Target: chr8 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 51 - 215
Target Start/End: Original strand, 42387389 - 42387553
Alignment:
Q  51 atttattgattaatctgcagacctatcacaaatcaacaggtaacaatattctaaagaatttccaatagcatatattagaaagcactaaatgaaattcaaa 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42387389 atttattgattaatctgcagacctatcacaaatcaacaggtaacaatattctaaagaatttccaatagcatatattagaaagcactaaatgaaattcaaa 42387488  T
Q  151 agatgtagaatatgatagcaacagcaaatattccatcagtaaacaagttattaataatctggtct 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42387489 agatgtagaatatgatagcaacagcaaatattccatcagtaaacaagttattaataatctggtct 42387553  T

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Target: chr6 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 60 - 215
Target Start/End: Complemental strand, 3190758 - 3190603
Alignment:
Q  60 ttaatctgcagacctatcacaaatcaacaggtaacaatattctaaagaatttccaatagcatatattagaaagcactaaatgaaattcaaaagatgtaga 159  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3190758 ttaatctgcagacctatcccaaatcaacaggtaacaatattctaaagaatttccaatagcatatattagaaagcactaaatgaaattcaaaagatgtaga 3190659  T
Q  160 atatgatagcaacagcaaatattccatcagtaaacaagttattaataatctggtct 215  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3190658 gtatgatagcaacagcaaatattccatcagtaaacaagttattaataatctggtct 3190603  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 62
Target Start/End: Original strand, 1752801 - 1752838
Alignment:
Q  25 agagagagaatattctcttttgtaagatttattgatta 62  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  1752801 agagagagactattctcttttgtaagatttattgatta 1752838  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 43414261 - 43414221
Alignment:
Q  17 aacagtaaagagagagaatattctcttttgtaagatttatt 57  Q
    ||||||||||||||||| |||| |||||||||||| |||||    
T  43414261 aacagtaaagagagagactattttcttttgtaagagttatt 43414221  T

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