View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_207 (Length: 310)
Name: NF10145A_low_207
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_207 |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 3 - 292
Target Start/End: Complemental strand, 29104389 - 29104100
Alignment:
| Q |
3 |
tgcagaaacagagaaatcaaagccggagaaaatttttcgattgcttgatatgtacgctacaatcaccgtgttgttgccggagattgaatcaattttctcg |
102 |
Q |
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| T |
29104389 |
tgcaaaaacaaagaaatcaaagccggagaagatttttcgcttgcttgatatgtacgctacaatcaccgtgttgttgccggagattgaatcaattttctcg |
29104290 |
T |
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| Q |
103 |
tttaattcaatagcagtcgttaaatctcaagcatataattcgcaacatcgattaatcgagtgtgtacgaaatcttcttttggaatttgagtctacaatat |
202 |
Q |
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| T |
29104289 |
tttaattcaacagcagtcgttaaatctcaagcatataattcgcaacatcgattaatcgagtgtgtacgaaatcttcttttggaatttgagtctacaatat |
29104190 |
T |
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| Q |
203 |
tgaaggattcttccaaatcagcggcaaatttcggcggagttcattccctgacaaaggaaacaatgcagtatctcattactcttgcagatt |
292 |
Q |
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| T |
29104189 |
tgaaggattcttccaaatcagcggcaaatttcggcggagttcattccctgacagaggaaacaatgcagtatctcattactcttgcagatt |
29104100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 25 - 275
Target Start/End: Complemental strand, 29090106 - 29089856
Alignment:
| Q |
25 |
ccggagaaaatttttcgattgcttgatatgtacgctacaatcaccgtgttgttgccggagattgaatcaattttctcgtttaattcaatagcagtcgtta |
124 |
Q |
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|||||||| ||||| || |||||||||||||| || ||||||||| ||||||| |||||| ||||||| |||||||| || ||||||| | | |||| |
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| T |
29090106 |
ccggagaagattttccgtttgcttgatatgtatgccacaatcaccatgttgttaccggaggttgaatcgattttctctttcaattcaacctctggtgtta |
29090007 |
T |
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| Q |
125 |
aatctcaagcatataattcgcaacatcgattaatcgagtgtgtacgaaatcttcttttggaatttgagtctacaatattgaaggattcttccaaatcagc |
224 |
Q |
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| T |
29090006 |
aatctcaagcatataattcacaacaaagactcgttgaatctgtaagaaatattttctcagaattcgagtccgcaatcctgaaggactcttccaaatcgct |
29089907 |
T |
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| Q |
225 |
ggcaaatttcggcggagttcattccctgacaaaggaaacaatgcagtatct |
275 |
Q |
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||| ||||||||||| |||||||||| |||| | |||||||||| ||||| |
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| T |
29089906 |
ggcgaatttcggcggtattcattcccttacaacgcaaacaatgcaatatct |
29089856 |
T |
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