View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_211 (Length: 307)

Name: NF10145A_low_211
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_211
NF10145A_low_211
[»] chr1 (9 HSPs)
chr1 (62-253)||(28639889-28640080)
chr1 (47-194)||(35989953-35990100)
chr1 (54-223)||(41932481-41932650)
chr1 (79-252)||(41933428-41933600)
chr1 (38-249)||(48182288-48182498)
chr1 (124-214)||(48892146-48892236)
chr1 (53-254)||(7134546-7134745)
chr1 (84-184)||(15499433-15499534)
chr1 (91-214)||(34549901-34550024)
[»] chr2 (3 HSPs)
chr2 (78-245)||(815596-815763)
chr2 (85-219)||(21649641-21649776)
chr2 (91-210)||(33945978-33946097)
[»] chr7 (8 HSPs)
chr7 (38-214)||(18500378-18500553)
chr7 (55-185)||(42012319-42012449)
chr7 (91-214)||(1906495-1906619)
chr7 (172-214)||(19646992-19647034)
chr7 (161-249)||(8920431-8920519)
chr7 (126-174)||(20171188-20171236)
chr7 (108-140)||(24450988-24451020)
chr7 (163-223)||(36279948-36280008)
[»] chr5 (10 HSPs)
chr5 (91-254)||(27690401-27690563)
chr5 (47-246)||(22417265-22417463)
chr5 (49-254)||(8840439-8840643)
chr5 (45-249)||(36520555-36520759)
chr5 (91-214)||(28443150-28443273)
chr5 (47-150)||(22407434-22407537)
chr5 (91-223)||(32285534-32285666)
chr5 (155-224)||(17476601-17476670)
chr5 (95-184)||(32695106-32695195)
chr5 (122-253)||(16490132-16490263)
[»] chr3 (3 HSPs)
chr3 (38-253)||(20860276-20860490)
chr3 (49-184)||(29582311-29582446)
chr3 (48-150)||(36337621-36337723)
[»] chr8 (4 HSPs)
chr8 (73-254)||(17865019-17865199)
chr8 (53-254)||(32124378-32124577)
chr8 (161-252)||(2287000-2287091)
chr8 (157-215)||(38621574-38621632)
[»] chr4 (4 HSPs)
chr4 (47-246)||(52598248-52598447)
chr4 (122-253)||(56084121-56084251)
chr4 (92-214)||(34953533-34953655)
chr4 (62-150)||(1655944-1656032)
[»] chr6 (3 HSPs)
chr6 (47-145)||(33555069-33555167)
chr6 (122-214)||(17519900-17519992)
chr6 (171-214)||(6837247-6837290)
[»] scaffold0185 (1 HSPs)
scaffold0185 (151-245)||(5065-5158)


Alignment Details
Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 62 - 253
Target Start/End: Original strand, 28639889 - 28640080
Alignment:
Q  62 aatctgaaacctcccagactaggtggattgtggcgtttcacccatggtttggacaatttatggtgtgtttaatgcatttatggtcggttggaccatggaa 161  Q
    ||||||||||||| || |||||||| |||||||||||||| | | ||||||||   ||| ||||||||||||||||||| ||||||||||||||||| ||    
T  28639889 aatctgaaacctcacatactaggtgaattgtggcgtttcatctaaggtttggatggtttgtggtgtgtttaatgcatttttggtcggttggaccatgtaa 28639988  T
Q  162 aatgtttcctttgactgtagttatggtctaggactagtttaagactataaataatcttgcatgattaaacagtttcattcattcttcacttc 253  Q
    |||||||||||||||||||||||| |||||||| |  |||||| |||||||||  |||||||| || |||| ||||||| ||||||||||||    
T  28639989 aatgtttcctttgactgtagttatagtctaggaatgatttaaggctataaatagccttgcatgcttcaacaatttcatttattcttcacttc 28640080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 47 - 194
Target Start/End: Original strand, 35989953 - 35990100
Alignment:
Q  47 agtttcagattgtaaaatctgaaacctcccagactaggtggattgtggcgtttcacccatggtttggacaatttatggtgtgtttaatgcatttatggtc 146  Q
    |||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||  ||||||||  ||| ||||||||||||||||||| |||||    
T  35989953 agtttcggattgtaaaatccgaaacatcccagactaggtggattgtggcgtttcacccaatgtttggacggtttgtggtgtgtttaatgcatttttggtc 35990052  T
Q  147 ggttggaccatggaaaatgtttcctttgactgtagttatggtctagga 194  Q
    ||||||||||||||||| |||| |||||||  ||||||||||||||||    
T  35990053 ggttggaccatggaaaacgttttctttgacaatagttatggtctagga 35990100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 54 - 223
Target Start/End: Original strand, 41932481 - 41932650
Alignment:
Q  54 gattgtaaaatctgaaacctcccagactaggtggattgtggcgtttcacccatggtttggacaatttatggtgtgtttaatgcatttatggtcggttgga 153  Q
    ||||||| |||| |||| ||| || ||||||||||||||||||||||||| | |||| ||||  ||| ||||||||||||||||||| ||||| |||| |    
T  41932481 gattgtataatccgaaaactctcaaactaggtggattgtggcgtttcaccaaaggttgggacggtttgtggtgtgtttaatgcatttttggtcagttgaa 41932580  T
Q  154 ccatggaaaatgtttcctttgactgtagttatggtctaggactagtttaagactataaataatcttgcat 223  Q
    ||||| |||||||||||||| | ||| ||||||||||  ||||  |||| |||||||||||  |||||||    
T  41932581 ccatgtaaaatgtttcctttaaatgttgttatggtctgagactgatttacgactataaataggcttgcat 41932650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 79 - 252
Target Start/End: Original strand, 41933428 - 41933600
Alignment:
Q  79 actaggtggattgtggcgtttcacccatggtttggacaatttatggtgtgtttaatgcatttatggtcggttggaccatggaaaatgtttcctttgactg 178  Q
    ||||||||||||||||||||||||| | |||||||||  ||| ||||||||||||| ||||| ||||| |||| |||||| |||||||||||||| | ||    
T  41933428 actaggtggattgtggcgtttcaccaaaggtttggacggtttgtggtgtgtttaatccatttttggtccgttgaaccatgtaaaatgtttcctttaaatg 41933527  T
Q  179 tagttatggtctaggactagtttaagactataaataatcttgcatgattaaacagtttcattcattcttcactt 252  Q
    | |||||||| | |||||  |||| |||||||||||  |||||||  || || | || ||||||||||||||||    
T  41933528 ttgttatggtatgggactgatttacgactataaataggcttgcat-cttcaaaaattccattcattcttcactt 41933600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 38 - 249
Target Start/End: Original strand, 48182288 - 48182498
Alignment:
Q  38 tattcagacagtttcagattgtaaaatctgaaacctcccagactaggtggattgtggcgtttcacccatggtttggacaatttatggtgtgtttaatgca 137  Q
    |||| ||||||||||||||| |  ||| |||||| |||| ||||  ||||| |||| | ||||||||| |||||| ||  ||| |||||||||||||| |    
T  48182288 tatttagacagtttcagattatgtaatttgaaacatcccggactgtgtggactgtgacatttcacccaaggtttg-actgtttgtggtgtgtttaatgta 48182386  T
Q  138 tttatggtcggttggaccatggaaaatgtttcctttgactgtagttatggtctaggactagtttaagactataaataatcttgcatgattaaacagtttc 237  Q
    ||| |||||||||||| ||| ||||| |||   ||||| |||| |||  ||||||||   |||||||  | |||||| | ||||||| || |||| ||||    
T  48182387 tttttggtcggttggagcattgaaaacgttatgtttgattgtatttacagtctaggataggtttaaggttttaaatagttttgcatgcttcaacaatttc 48182486  T
Q  238 attcattcttca 249  Q
    ||||||||||||    
T  48182487 attcattcttca 48182498  T

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Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 124 - 214
Target Start/End: Complemental strand, 48892236 - 48892146
Alignment:
Q  124 gtgtgtttaatgcatttatggtcggttggaccatggaaaatgtttcctttgactgtagttatggtctaggactagtttaagactataaata 214  Q
    ||||||||||||||||| ||| |||||||  ||||||||| || || |||||||||||||||| |||| |||| |||||||  ||||||||    
T  48892236 gtgtgtttaatgcatttttggacggttggggcatggaaaacgtatcatttgactgtagttatgatctatgacttgtttaaggttataaata 48892146  T

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Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 53 - 254
Target Start/End: Complemental strand, 7134745 - 7134546
Alignment:
Q  53 agattgtaaaatctgaaacctcccagactaggtggattgtggcgtttcacccatggtttggacaatttatggtgtgtttaatgcatttatggtcggttgg 152  Q
    |||||||| |||||||||||||||||| |||||| | ||||| |||||||||| |||||  ||   || ||  ||||||||||  ||| || ||| ||||    
T  7134745 agattgtagaatctgaaacctcccagattaggtgaaatgtggtgtttcacccaaggtttaaacggattgtg--gtgtttaatgtgtttttgatcgtttgg 7134648  T
Q  153 accatggaaaatgtttcctttgactgtagttatggtctaggactagtttaagactataaataatcttgcatgattaaacagtttcattcattcttcactt 252  Q
    | ||  ||||| ||||| ||| |||||||||||| |||| || |   ||||   ||||||||   ||||||| || |||| |||||||||||||||||||    
T  7134647 agcaatgaaaacgtttcatttaactgtagttatgatctacgaatgtattaaagttataaatagcattgcatgcttcaacaatttcattcattcttcactt 7134548  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 184
Target Start/End: Complemental strand, 15499534 - 15499433
Alignment:
Q  84 gtggattgtggcgtttcacccatggtttggacaatttatggtgtgtttaatg-catttatggtcggttggaccatggaaaatgtttcctttgactgtagt 182  Q
    ||||||||||||||| |||| |  | ||||||  |||||||||||||||||| | ||| ||||||||| |   |||| ||||||||||||||| ||||||    
T  15499534 gtggattgtggcgttacaccaaatgcttggacggtttatggtgtgtttaatgtcgtttttggtcggtttggaaatggtaaatgtttcctttgattgtagt 15499435  T
Q  183 ta 184  Q
    ||    
T  15499434 ta 15499433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 91 - 214
Target Start/End: Complemental strand, 34550024 - 34549901
Alignment:
Q  91 gtggcgtttcacccatggtttggacaatttatggtgtgtttaatgcatttatggtcggttggaccatggaaaatgtttcctttgactgtagttatggtct 190  Q
    ||||||||||||  | |||||||||  ||  |||||||||||||| |||| ||  ||||||||   ||||||| ||||  ||| | |||||||||| |||    
T  34550024 gtggcgtttcactaaaggtttggacggttagtggtgtgtttaatgaatttttgaacggttggatggtggaaaacgttttatttaattgtagttatgatct 34549925  T
Q  191 aggactagtttaagactataaata 214  Q
    |||||| |||| || |||||||||    
T  34549924 aggacttgttttaggctataaata 34549901  T

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Target: chr2 (Bit Score: 88; Significance: 3e-42; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 78 - 245
Target Start/End: Complemental strand, 815763 - 815596
Alignment:
Q  78 gactaggtggattgtggcgtttcacccatggtttggacaatttatggtgtgtttaatgcatttatggtcggttggaccatggaaaatgtttcctttgact 177  Q
    ||||||||||| | || ||||||||| | ||||| |||  ||| ||||||||||||||||||| ||||||||||||||||| |||| ||||||||||| |    
T  815763 gactaggtggaatatgacgtttcaccaaaggtttagacggtttgtggtgtgtttaatgcatttttggtcggttggaccatgaaaaacgtttcctttgaat 815664  T
Q  178 gtagttatggtctaggactagtttaagactataaataatcttgcatgattaaacagtttcattcattc 245  Q
    ||||||||||||||||||| |||||||||||||||||  ||||||||  | |||| ||||||||||||    
T  815663 gtagttatggtctaggacttgtttaagactataaataggcttgcatgcatcaacaatttcattcattc 815596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 85 - 219
Target Start/End: Original strand, 21649641 - 21649776
Alignment:
Q  85 tggattgtggcgtttcacccatgg-tttggacaatttatggtgtgtttaatgcatttatggtcggttggaccatggaaaatgtttcctttgactgtagtt 183  Q
    ||||| ||||||||||| |||  | |||||||  ||| |||||||||||||| |||| |||  |||||||   ||||||| | ||  |||||||||||||    
T  21649641 tggatggtggcgtttcatccaaagatttggacggtttgtggtgtgtttaatgaatttttggatggttggaaggtggaaaacgctttatttgactgtagtt 21649740  T
Q  184 atggtctaggactagtttaagactataaataatctt 219  Q
    ||  ||||||||| ||||||| ||||||||| ||||    
T  21649741 ataatctaggacttgtttaaggctataaatagtctt 21649776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 91 - 210
Target Start/End: Complemental strand, 33946097 - 33945978
Alignment:
Q  91 gtggcgtttcacccatggtttggacaatttatggtgtgtttaatgcatttatggtcggttggaccatggaaaatgtttcctttgactgtagttatggtct 190  Q
    |||||| |||||| |  |||| ||| |||| ||||| |||||| | |||| ||| ||||||||| ||||||||  |||  |||||||||||||||| |||    
T  33946097 gtggcgattcaccaaatgtttagacgatttgtggtgcgtttaaagaatttttggacggttggacaatggaaaacattttatttgactgtagttatgatct 33945998  T
Q  191 aggactagtttaagactata 210  Q
    |||||| |||| || |||||    
T  33945997 aggacttgttttaggctata 33945978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 4e-38; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 38 - 214
Target Start/End: Complemental strand, 18500553 - 18500378
Alignment:
Q  38 tattcagacagtttcagattgtaaaatctgaaacctcccagactaggtggattgtggcgtttcacccatggtttggacaatttatggtgtgtttaatgca 137  Q
    |||| |||||| |||| |||||| ||||||||||||| |||||||| ||||  |||  |||||||| | ||||||||| |||| ||||||||||||||||    
T  18500553 tatttagacaggttcaaattgtataatctgaaacctctcagactagttggacggtgatgtttcaccaaaggtttggacgatttgtggtgtgtttaatgca 18500454  T
Q  138 tttatggtcggttggaccatggaaaatgtttcctttgactgtagttatggtctaggactagtttaagactataaata 214  Q
    ||| |||| ||||||||||||| ||| ||||| |||||| ||||||||| ||||||||| |||||||||||| ||||    
T  18500453 tttttggt-ggttggaccatgggaaacgtttcgtttgaccgtagttatgatctaggactggtttaagactattaata 18500378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 55 - 185
Target Start/End: Complemental strand, 42012449 - 42012319
Alignment:
Q  55 attgtaaaatctgaaacctcccagactaggtggattgtggcgtttcacccatggtttggacaatttatggtgtgtttaatgcatttatggtcggttggac 154  Q
    |||||| ||||||||| ||| || |||||||||||||||||||| |||||| |||||| |   ||||||| |||||||||| |||| ||||  |||||||    
T  42012449 attgtataatctgaaaactctcatactaggtggattgtggcgttgcacccaaggtttgaattgtttatggcgtgtttaatgtatttttggttagttggac 42012350  T
Q  155 catggaaaatgtttcctttgactgtagttat 185  Q
    ||| ||||||||||||||||||| |||||||    
T  42012349 catagaaaatgtttcctttgactatagttat 42012319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 91 - 214
Target Start/End: Original strand, 1906495 - 1906619
Alignment:
Q  91 gtggcgtttcacccatggtttggacaatttatggtgtgtttaatgcatttatggtcggttggaccatggaaaat-gtttcctttgactgtagttatggtc 189  Q
    ||||||||||| | |  ||||||||  ||| ||| ||||||||||||  | ||| || ||||||||| |||||  | ||||||||||||||||| || ||    
T  1906495 gtggcgtttcatcaaaagtttggacggtttgtggagtgtttaatgcagctttggacgattggaccatagaaaaacgcttcctttgactgtagttgtgatc 1906594  T
Q  190 taggactagtttaagactataaata 214  Q
    ||||||  |||||||||||||||||    
T  1906595 taggacatgtttaagactataaata 1906619  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 214
Target Start/End: Complemental strand, 19647034 - 19646992
Alignment:
Q  172 ttgactgtagttatggtctaggactagtttaagactataaata 214  Q
    ||||||||| ||||| ||||||||| |||||||||||||||||    
T  19647034 ttgactgtaattatgatctaggactggtttaagactataaata 19646992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 249
Target Start/End: Complemental strand, 8920519 - 8920431
Alignment:
Q  161 aaatgtttcctttgactgtagttatggtctaggactagtttaagactataaataatcttgcatgattaaacagtttcattcattcttca 249  Q
    ||||||||||||||||| ||||||   |||||||  | |||| ||||||||||| ||||||||| || || |  ||||||| |||||||    
T  8920519 aaatgtttcctttgactatagttacaatctaggataaatttatgactataaatagtcttgcatgcttcaatatattcattcgttcttca 8920431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 174
Target Start/End: Complemental strand, 20171236 - 20171188
Alignment:
Q  126 gtgtttaatgcatttatggtcggttggaccatggaaaatgtttcctttg 174  Q
    |||||| |||||||| ||| |||||||||||||||||| | ||||||||    
T  20171236 gtgtttgatgcatttttgggcggttggaccatggaaaacgcttcctttg 20171188  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 140
Target Start/End: Original strand, 24450988 - 24451020
Alignment:
Q  108 gtttggacaatttatggtgtgtttaatgcattt 140  Q
    ||||||| |||||||||||||||||||||||||    
T  24450988 gtttggaaaatttatggtgtgtttaatgcattt 24451020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 36280008 - 36279948
Alignment:
Q  163 atgtttcctttgactgtagttatggtctaggactagtttaagactataaataatcttgcat 223  Q
    |||||||||||||||| |||||| ||||||||    |||| ||||||||||| ||||||||    
T  36280008 atgtttcctttgactgcagttatagtctaggaacgttttatgactataaatagtcttgcat 36279948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 91 - 254
Target Start/End: Original strand, 27690401 - 27690563
Alignment:
Q  91 gtggcgtttcacccatggtttggacaatttatggtgtgtttaatgcatttatggtcggttggaccatggaaaatgtttcctttgactgtagttatggtct 190  Q
    ||||||||||| | | |||||||||  ||| ||  ||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||    
T  27690401 gtggcgtttcatcaaaggtttggacggtttgtgaagtgtttaatgcatttttggtcggttggaccatggaaaacgcttcctttgactgtagttatggtct 27690500  T
Q  191 aggactagtttaagactataaataatcttgcatgattaaacagtttcattcattcttcacttcc 254  Q
    ||||||  |||||| |||||||||  |||||||  || |||| |||||||||||||||||||||    
T  27690501 aggactgatttaaggctataaatatgcttgcat-cttcaacaatttcattcattcttcacttcc 27690563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 47 - 246
Target Start/End: Original strand, 22417265 - 22417463
Alignment:
Q  47 agtttcagattgtaaaatctgaaacctcccagactaggtggattgtggcgtttcacccatggtttggacaatttatggtgtgtttaatgcatttatggtc 146  Q
    ||||||| ||| || ||||||||||||||||||||  |||||||||||||||||||||| |||||| ||| ||| |||||||||||| | |||| |||||    
T  22417265 agtttcaaattatataatctgaaacctcccagactgtgtggattgtggcgtttcacccaaggtttgaacagtttgtggtgtgtttaaagtatttttggtc 22417364  T
Q  147 ggttggaccatggaaaatgtttcctttgactgtagttatggtctaggactag-tttaagactataaataatcttgcatgattaaacagtttcattcattc 245  Q
    ||||    ||| |  |||||||||||||||||||||||  |||||||| ||| |||| || |||||||| ||||||||| || ||||  |||||| ||||    
T  22417365 ggtttatgcattg-gaatgtttcctttgactgtagttacagtctagga-tagatttacgaatataaatagtcttgcatgcttcaacaaattcattgattc 22417462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 49 - 254
Target Start/End: Complemental strand, 8840643 - 8840439
Alignment:
Q  49 tttcagattgtaaaatctgaaacctcccagactaggtggattgtggcgtttcacccatggtttggacaatttatggtgtgtttaatgcatttatggtcgg 148  Q
    |||| ||||| | |||| |||||||||||| ||| |||||  ||||||||||||||| ||||||||   ||| |||||||||||||| |||| ||||| |    
T  8840643 tttcggattgcataatccgaaacctcccaggctaagtggaacgtggcgtttcacccaaggtttggatggtttgtggtgtgtttaatgtatttttggtcag 8840544  T
Q  149 ttggaccatggaaaatgtttcctttgactgtagttatggtctaggactagtt-taagactataaataatcttgcatgattaaacagtttcattcattctt 247  Q
    ||||| ||| ||||| ||||||||||| ||||||||   ||||||||  ||| |||| ||||||||| || |||||| || |||| ||||||||||||||    
T  8840543 ttggatcat-gaaaaagtttcctttgattgtagttacaatctaggacaggttataag-ctataaatagtcctgcatgctttaacaatttcattcattctt 8840446  T
Q  248 cacttcc 254  Q
    | |||||    
T  8840445 cgcttcc 8840439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 45 - 249
Target Start/End: Original strand, 36520555 - 36520759
Alignment:
Q  45 acagtttcagattgtaaaatctgaaacctcccagactaggtggattgtggcgtttcacccatggtttggacaatttatggtgtgtttaatgcatttatgg 144  Q
    |||| ||| ||||||||||| |||||||||||||| || ||||| ||||| || |||| || ||||||| |  ||| |||||||||||||| | || |||    
T  36520555 acagattcggattgtaaaatatgaaacctcccagattatgtggagtgtggtgtgtcacacaaggtttgggcggtttgtggtgtgtttaatgtaattttgg 36520654  T
Q  145 tcggttggaccatggaaaatgtttcctttgactgtagttatggtctaggactagtttaagactataaataatcttgcatgattaaacagtttcattcatt 244  Q
      |||  || |||||||||| |||||||| |||||||||||  |||| |||| ||||||| |||||||||   ||||||| || |||| |||||||||||    
T  36520655 ctggtccgagcatggaaaatatttcctttcactgtagttataatctatgactggtttaaggctataaatagaattgcatggttcaacaatttcattcatt 36520754  T
Q  245 cttca 249  Q
     ||||    
T  36520755 tttca 36520759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 91 - 214
Target Start/End: Complemental strand, 28443273 - 28443150
Alignment:
Q  91 gtggcgtttcacccatggtttggacaatttatggtgtgtttaatgcatttatggtcggttggaccatggaaaatgtttcctttgactgtagttatggtct 190  Q
    ||||||||| ||| |  |||||||| |||| ||||||||||||||||||| |||  |||||| ||||| |||| || || |||||||||||||||| |||    
T  28443273 gtggcgtttaaccaaatgtttggacgatttgtggtgtgtttaatgcatttttggatggttgggccatgaaaaacgtatcatttgactgtagttatgatct 28443174  T
Q  191 aggactagtttaagactataaata 214  Q
    ||||   ||||||| |||||||||    
T  28443173 aggaaaggtttaaggctataaata 28443150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 47 - 150
Target Start/End: Original strand, 22407434 - 22407537
Alignment:
Q  47 agtttcagattgtaaaatctgaaacctcccagactaggtggattgtggcgtttcacccatggtttggacaatttatggtgtgtttaatgcatttatggtc 146  Q
    ||||||| ||| || ||||| ||||||||||||||  ||||| ||| |||||||||||| | ||| |||| ||| |||||||||||||| |||| |||||    
T  22407434 agtttcaaattatataatctaaaacctcccagactgtgtggactgtcgcgtttcacccaagatttagacagtttgtggtgtgtttaatgtatttttggtc 22407533  T
Q  147 ggtt 150  Q
    ||||    
T  22407534 ggtt 22407537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 91 - 223
Target Start/End: Complemental strand, 32285666 - 32285534
Alignment:
Q  91 gtggcgtttcacccatggtttggacaatttatggtgtgtttaatgcatttatggtcggttggaccatggaaaatgtttcctttgactgtagttatggtct 190  Q
    ||||||||||||| |   |||||||  ||| |||||||||||||| ||||  ||   ||||| || ||||||| | |||||||||||||||||||| |||    
T  32285666 gtggcgtttcaccaaaaatttggacggtttgtggtgtgtttaatgtattttgggatagttgggccttggaaaacgcttcctttgactgtagttatgatct 32285567  T
Q  191 aggactagtttaagactataaataatcttgcat 223  Q
    ||||   ||||||| |||||||||  |||||||    
T  32285566 aggatatgtttaaggctataaatagacttgcat 32285534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 224
Target Start/End: Complemental strand, 17476670 - 17476601
Alignment:
Q  155 catggaaaatgtttcctttgactgtagttatggtctaggactagtttaagactataaataatcttgcatg 224  Q
    ||||| ||||||||||||||| |||||||| |||||| ||  |||||| | ||||||||||| |||||||    
T  17476670 catggtaaatgtttcctttgattgtagttacggtctatgataagtttatggctataaataattttgcatg 17476601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 184
Target Start/End: Complemental strand, 32695195 - 32695106
Alignment:
Q  95 cgtttcacccatggtttggacaatttatggtgtgtttaatgcatttatggtcggttggaccatggaaaatgtttcctttgactgtagtta 184  Q
    ||||||||| |  ||||||||  ||| |||||| |||||||||||| ||| ||||||| ||||| |||| | ||||||||| ||||||||    
T  32695195 cgtttcaccaaaagtttggacggtttgtggtgtatttaatgcatttttggacggttgggccatgtaaaacgcttcctttgattgtagtta 32695106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 122 - 253
Target Start/End: Original strand, 16490132 - 16490263
Alignment:
Q  122 tggtgtgtttaatgcatttatggtcggttggaccatggaaaatgtttcctttgactgtagttatggtctaggactagtttaagactataaataatcttgc 221  Q
    |||||||||||||| |||| |||||||||    ||| | ||| || |||||||| ||||||||  ||||||||  | |||| | ||||||||| ||||||    
T  16490132 tggtgtgtttaatgtatttttggtcggtttaggcatcgtaaacgtatcctttgaatgtagttacagtctaggataattttatggctataaatagtcttgc 16490231  T
Q  222 atgattaaacagtttcattcattcttcacttc 253  Q
    ||| |  ||||  || ||||||||||||||||    
T  16490232 atgttataacatattaattcattcttcacttc 16490263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 38 - 253
Target Start/End: Original strand, 20860276 - 20860490
Alignment:
Q  38 tattcagacagtttcagattgtaaaatctgaaacctcccagactaggtggattgtggcgtttcacccatggtttggacaatttatggtgtgtttaatgca 137  Q
    |||| ||| ||||||| |||||| ||||||||||||||||||||| |||||||||||| ||||||||| |||||| | | ||| ||| |||||||||| |    
T  20860276 tatttagagagtttcatattgtataatctgaaacctcccagactacgtggattgtggcatttcacccaaggtttgaatagtttgtgg-gtgtttaatgta 20860374  T
Q  138 tttatggtcggttggaccatggaaaatgtttcctttgactgtagttatggtctaggactagtttaagactataaataatcttgcatgattaaacagtttc 237  Q
    ||| || ||||||||| |||| |||||||||| ||| | ||||||||  | |||||||  ||||||| |||||||||  ||| |||| || |||| ||||    
T  20860375 tttttgatcggttggagcatgaaaaatgtttcatttcattgtagttagagcctaggacaggtttaaggctataaatagccttacatgcttcaacaatttc 20860474  T
Q  238 attcattcttcacttc 253  Q
    |||||||| |||||||    
T  20860475 attcattcatcacttc 20860490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 49 - 184
Target Start/End: Complemental strand, 29582446 - 29582311
Alignment:
Q  49 tttcagattgtaaaatctgaaacctcccagactaggtggattgtggcgtttcacccatggtttggacaatttatggtgtgtttaatgcatttatggtcgg 148  Q
    |||| |||| || ||||| |||||||| |||||  ||| | |||||||||||||||| ||||||||  |||| |||||||||||||||||||  ||||||    
T  29582446 tttcggattatataatctaaaacctcctagactgtgtgaagtgtggcgtttcacccaaggtttggatgatttgtggtgtgtttaatgcattttcggtcgg 29582347  T
Q  149 ttggaccatggaaaatgtttcctttgactgtagtta 184  Q
    ||||| ||| | ||||||||||||| ||||||||||    
T  29582346 ttggaacattgtaaatgtttccttttactgtagtta 29582311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 150
Target Start/End: Complemental strand, 36337723 - 36337621
Alignment:
Q  48 gtttcagattgtaaaatctgaaacctcccagactaggtggattgtggcgtttcacccatggtttggacaatttatggtgtgtttaatgcatttatggtcg 147  Q
    |||||||||| || |||||||||||||| |||||   |||| |||| | || ||||||  ||||||||  ||| ||||||||||||||||||| | ||||    
T  36337723 gtttcagattatataatctgaaacctcctagactgcatggaatgtgacattacacccaaagtttggacggtttgtggtgtgtttaatgcatttttagtcg 36337624  T
Q  148 gtt 150  Q
    |||    
T  36337623 gtt 36337621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 73 - 254
Target Start/End: Original strand, 17865019 - 17865199
Alignment:
Q  73 tcccagactaggtggattgtggcgtttcacccatggtttggacaatttatggtgtgtttaatgcatttatggtcggttggaccatggaaaatgtttcctt 172  Q
    ||||||||||||| || |||||| ||||||||| |||||| ||  ||| ||| ||||||||| ||||| |||| | ||| || |||||||| ||||||||    
T  17865019 tcccagactaggttgactgtggcttttcacccaaggtttgaacggtttgtggcgtgtttaattcatttttggttg-ttgaactatggaaaacgtttcctt 17865117  T
Q  173 tgactgtagttatggtctaggactagtttaagactataaataatcttgcatgattaaacagtttcattcattcttcacttcc 254  Q
    ||| ||||||||| ||||| ||||||||||||||||||||||  |||||||  || |||| ||| |||||||||| ||||||    
T  17865118 tgattgtagttatagtctatgactagtttaagactataaatagccttgcattgttcaacaattttattcattctttacttcc 17865199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 53 - 254
Target Start/End: Original strand, 32124378 - 32124577
Alignment:
Q  53 agattgtaaaatctgaaacctcccagactaggtggattgtggcgtttcacccatggtttggacaatttatggtgtgtttaatgcatttatggtcggttgg 152  Q
    ||||| || ||||||||||||||||||||| ||| | | || ||||||||||| | |||||||  ||| | |||| |||||||||||| |||||||||||    
T  32124378 agattatataatctgaaacctcccagactatgtgcactatgacgtttcacccaagatttggacggttttttgtgtctttaatgcatttttggtcggttgg 32124477  T
Q  153 accatggaaaatgtttcctttgactgtagttatggtctaggactagtttaagactataaataatcttgcatgattaaacagtttcattcattcttcactt 252  Q
    ||||||  |||  |||| ||||||| |||||||| | || |||| |||||||||| ||||||  |||||||  | ||| |  ||||||||||||||||||    
T  32124478 accatgacaaacctttcatttgactatagttatgattta-gactggtttaagactttaaataggcttgcatcgtcaaa-aaattcattcattcttcactt 32124575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 252
Target Start/End: Complemental strand, 2287091 - 2287000
Alignment:
Q  161 aaatgtttcctttgactgtagttatggtctaggactagtttaagactataaataatcttgcatgattaaacagtttcattcattcttcactt 252  Q
    ||||||||||||| ||| ||||||  ||||| ||  | |||| ||||||||||||  ||||||  ||||||| |||||||||||||||||||    
T  2287091 aaatgtttcctttaactatagttaccgtctatgaacattttatgactataaataacattgcattcttaaacattttcattcattcttcactt 2287000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 38621574 - 38621632
Alignment:
Q  157 tggaaaatgtttcctttgactgtagttatggtctaggactagtttaagactataaataa 215  Q
    ||||||||||||  |||||  ||||||||| ||||||||| ||||||||||||||||||    
T  38621574 tggaaaatgttttatttgatagtagttatgatctaggactcgtttaagactataaataa 38621632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 8e-21; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 47 - 246
Target Start/End: Complemental strand, 52598447 - 52598248
Alignment:
Q  47 agtttcagattgtaaaatctgaaacctcccagactaggtggattgtggcgtttcacccatggtttggacaatttatggtgtgtttaatgcatttatggtc 146  Q
    ||||||||||| ||  ||| ||||||| |||||||  ||||||||||||||||||||   |||||||||| ||  ||||||||| |||  |||| |||||    
T  52598447 agtttcagattatatgatcggaaaccttccagactgtgtggattgtggcgtttcaccagaggtttggacagttcgtggtgtgttcaatatatttttggtc 52598348  T
Q  147 ggttggaccatggaaaatgtttcctttgactgtagttatggtctaggactagtttaagactataaataatcttgcatgattaaacagtttcattcattct 246  Q
    ||||||| | | | ||| ||||| ||||||||||||||   |||||||   ||||| ||||||| ||| ||||||||| || ||||  ||||||| ||||    
T  52598347 ggttggagctttgtaaacgtttcttttgactgtagttacaatctaggataggtttatgactatacatagtcttgcatgcttcaacaaattcattctttct 52598248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 122 - 253
Target Start/End: Complemental strand, 56084251 - 56084121
Alignment:
Q  122 tggtgtgtttaatgcatttatggtcggttggaccatggaaaatgtttcctttgactgtagttatggtctaggactagtttaagactataaataatcttgc 221  Q
    ||||||||||||||||||| ||| | ||||| | ||||||||  |   |||||| |||||||||| ||||||||| ||||||| |||||||||  |||||    
T  56084251 tggtgtgtttaatgcatttttggactgttgggctatggaaaacatactctttgattgtagttatgatctaggacttgtttaaggctataaatatgcttgc 56084152  T
Q  222 atgattaaacagtttcattcattcttcacttc 253  Q
    || ||| ||||  |||||||||||||||||||    
T  56084151 at-attcaacaaattcattcattcttcacttc 56084121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 92 - 214
Target Start/End: Original strand, 34953533 - 34953655
Alignment:
Q  92 tggcgtttcacccatggtttggacaatttatggtgtgtttaatgcatttatggtcggttggaccatggaaaatgtttcctttgactgtagttatggtcta 191  Q
    |||||||||||| |||||||||||  ||  ||| ||||||||||||||| ||| ||||||||   ||||| | ||||  |||||||||||||||| ||||    
T  34953533 tggcgtttcaccaatggtttggacggttagtggagtgtttaatgcatttttggacggttggattgtggaacacgttttatttgactgtagttatgatcta 34953632  T
Q  192 ggactagtttaagactataaata 214  Q
    |||||  ||| || |||||||||    
T  34953633 ggacttattttaggctataaata 34953655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 150
Target Start/End: Original strand, 1655944 - 1656032
Alignment:
Q  62 aatctgaaacctcccagactaggtggattgtggcgtttcacccatggtttggacaatttatggtgtgtttaatgcatttatggtcggtt 150  Q
    |||| ||||||||| ||||||  |||| | |||| |||||  || ||||| ||| |||| |||||||||||||| ||||||||| ||||    
T  1655944 aatccgaaacctccaagactatatggactctggcatttcaatcaaggtttagacgatttgtggtgtgtttaatgaatttatggttggtt 1656032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 145
Target Start/End: Original strand, 33555069 - 33555167
Alignment:
Q  47 agtttcagattgtaaaatctgaaacctcccagactaggtggattgtggcgtttcacccatggtttggacaatttatggtgtgtttaatgcatttatggt 145  Q
    ||||||||||| || |||| |||||||||||||||  ||||||||||||||  |||||| |||||| ||  ||| |||||| |||||||||||| ||||    
T  33555069 agtttcagattatataatccgaaacctcccagactgtgtggattgtggcgtaacacccaaggtttgaacggtttgtggtgtatttaatgcatttttggt 33555167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 122 - 214
Target Start/End: Complemental strand, 17519992 - 17519900
Alignment:
Q  122 tggtgtgtttaatgcatttatggtcggttggaccatggaaaatgtttcctttgactgtagttatggtctaggactagtttaagactataaata 214  Q
    |||||||||||||| |||| |||||||||||||  || ||||| |||  |||||||||||||||| |||| |||| |||| || |||||||||    
T  17519992 tggtgtgtttaatgaatttttggtcggttggacggtgaaaaatattttatttgactgtagttatgatctatgacttgttttaggctataaata 17519900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 171 - 214
Target Start/End: Original strand, 6837247 - 6837290
Alignment:
Q  171 tttgactgtagttatggtctaggactagtttaagactataaata 214  Q
    |||||||||||||||| |||||||||  ||||||||||||||||    
T  6837247 tttgactgtagttatgatctaggactgatttaagactataaata 6837290  T

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Target: scaffold0185 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0185
Description:

Target: scaffold0185; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 245
Target Start/End: Complemental strand, 5158 - 5065
Alignment:
Q  151 ggaccatggaaaatgtttcctttgactgtagttatggtctaggactagtttaagactataaataatcttgcatgattaaacagtttcattcattc 245  Q
    |||| ||| |||||||||||||||| |||||||||||| || |||| |||||||  ||||||||  |||||||  |||||||  |||||||||||    
T  5158 ggactatgaaaaatgtttcctttgattgtagttatggtttatgacttgtttaaggttataaataggcttgcat-cttaaacaaattcattcattc 5065  T

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