View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_212 (Length: 307)

Name: NF10145A_low_212
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_212
NF10145A_low_212
[»] chr2 (11 HSPs)
chr2 (1-101)||(6295433-6295533)
chr2 (249-302)||(19523308-19523361)
chr2 (139-185)||(5852474-5852519)
chr2 (139-185)||(11728147-11728192)
chr2 (139-185)||(30339993-30340038)
chr2 (139-185)||(30487495-30487540)
chr2 (139-185)||(36383462-36383507)
chr2 (139-185)||(36909869-36909914)
chr2 (139-185)||(40721771-40721816)
chr2 (139-185)||(44484682-44484727)
chr2 (139-179)||(5031923-5031962)
[»] chr7 (15 HSPs)
chr7 (139-185)||(47944982-47945028)
chr7 (139-185)||(47950412-47950458)
chr7 (139-185)||(33050183-33050228)
chr7 (139-185)||(2347085-2347130)
chr7 (139-185)||(2600560-2600605)
chr7 (139-185)||(4971290-4971335)
chr7 (139-185)||(11789717-11789762)
chr7 (139-185)||(28548247-28548292)
chr7 (139-185)||(29763830-29763875)
chr7 (139-185)||(30538626-30538671)
chr7 (139-185)||(30864443-30864488)
chr7 (139-185)||(37969931-37969976)
chr7 (139-185)||(44511139-44511184)
chr7 (139-185)||(48639409-48639454)
chr7 (140-184)||(37325846-37325889)
[»] chr1 (12 HSPs)
chr1 (249-300)||(43105216-43105267)
chr1 (138-185)||(35972830-35972876)
chr1 (142-185)||(48336464-48336506)
chr1 (139-185)||(6396327-6396372)
chr1 (139-185)||(12999848-12999893)
chr1 (139-185)||(41564906-41564951)
chr1 (139-185)||(42256460-42256505)
chr1 (139-180)||(21433432-21433472)
chr1 (139-184)||(23400016-23400060)
chr1 (249-302)||(40053017-40053070)
chr1 (250-302)||(43757698-43757750)
chr1 (141-185)||(50035563-50035606)
[»] chr8 (17 HSPs)
chr8 (139-185)||(5742683-5742728)
chr8 (137-180)||(10644833-10644875)
chr8 (139-185)||(21649194-21649239)
chr8 (139-185)||(27300346-27300391)
chr8 (139-185)||(28156203-28156248)
chr8 (139-185)||(32674258-32674303)
chr8 (139-185)||(35701853-35701898)
chr8 (139-185)||(35937538-35937583)
chr8 (139-185)||(41273515-41273560)
chr8 (139-184)||(22203242-22203286)
chr8 (139-184)||(37784401-37784445)
chr8 (250-299)||(38939102-38939151)
chr8 (139-179)||(1248253-1248292)
chr8 (139-183)||(20288533-20288576)
chr8 (139-183)||(21075162-21075205)
chr8 (137-185)||(37568640-37568687)
chr8 (138-178)||(43602456-43602495)
[»] chr6 (4 HSPs)
chr6 (139-185)||(3339525-3339570)
chr6 (139-178)||(28965873-28965911)
chr6 (139-180)||(25127864-25127904)
chr6 (138-182)||(2056782-2056825)
[»] chr3 (15 HSPs)
chr3 (139-185)||(11327108-11327153)
chr3 (139-185)||(54233494-54233539)
chr3 (249-302)||(16295575-16295628)
chr3 (141-184)||(38471644-38471686)
chr3 (139-185)||(2280177-2280222)
chr3 (139-185)||(8254027-8254072)
chr3 (139-185)||(14839071-14839116)
chr3 (139-185)||(16295464-16295509)
chr3 (139-185)||(32931944-32931989)
chr3 (139-185)||(36818956-36819001)
chr3 (139-181)||(48405410-48405451)
chr3 (139-180)||(29573387-29573427)
chr3 (140-185)||(44689793-44689837)
chr3 (139-184)||(48944737-48944781)
chr3 (140-180)||(47101523-47101562)
[»] scaffold0592 (1 HSPs)
scaffold0592 (249-302)||(1021-1074)
[»] scaffold0036 (1 HSPs)
scaffold0036 (249-302)||(54569-54622)
[»] chr4 (14 HSPs)
chr4 (249-302)||(33777005-33777058)
chr4 (139-184)||(35037609-35037653)
chr4 (139-185)||(3475869-3475914)
chr4 (139-185)||(5208353-5208398)
chr4 (139-185)||(26442416-26442461)
chr4 (139-185)||(29863551-29863596)
chr4 (139-185)||(31318753-31318798)
chr4 (139-185)||(55268027-55268072)
chr4 (139-184)||(1796366-1796410)
chr4 (139-184)||(7037511-7037555)
chr4 (139-180)||(51359821-51359861)
chr4 (138-178)||(169535-169574)
chr4 (139-179)||(8810571-8810610)
chr4 (141-185)||(43307395-43307438)
[»] chr5 (16 HSPs)
chr5 (138-178)||(7077375-7077414)
chr5 (142-185)||(5005105-5005148)
chr5 (139-185)||(1107981-1108026)
chr5 (139-185)||(3031834-3031879)
chr5 (139-185)||(9594478-9594523)
chr5 (139-185)||(9599754-9599799)
chr5 (139-185)||(14914372-14914417)
chr5 (139-185)||(18729315-18729360)
chr5 (139-185)||(28501592-28501637)
chr5 (139-185)||(29765830-29765875)
chr5 (139-185)||(30574403-30574448)
chr5 (139-185)||(39032630-39032675)
chr5 (139-184)||(3263535-3263579)
chr5 (139-180)||(18695318-18695358)
chr5 (139-184)||(25585483-25585527)
chr5 (139-179)||(42225798-42225837)
[»] scaffold0651 (1 HSPs)
scaffold0651 (139-185)||(4872-4917)
[»] scaffold0014 (1 HSPs)
scaffold0014 (139-185)||(145061-145106)
[»] scaffold0049 (1 HSPs)
scaffold0049 (137-178)||(72202-72242)


Alignment Details
Target: chr2 (Bit Score: 77; Significance: 9e-36; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 6295533 - 6295433
Alignment:
Q  1 tttcaatctttggttttaaattttattaaatcaaaatctaaacattttaattttaatcgagtggccactattgtgacgactactgagaatctaatttcaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||  |||||||||||  ||||||||||||||||    
T  6295533 tttcaatctttggttttaaattttattaaatcaaaatctaaacattttaatcttaatcgagcggccactgatgtgacgactatagagaatctaatttcaa 6295434  T
Q  101 c 101  Q
    |    
T  6295433 c 6295433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 249 - 302
Target Start/End: Complemental strand, 19523361 - 19523308
Alignment:
Q  249 gaccaataaaaagagagaacaataaatttatctcagaaattgtaccaaaatagt 302  Q
    |||||||||||||||||||||||||| || |  || ||||||||||||||||||    
T  19523361 gaccaataaaaagagagaacaataaaattgtaccaaaaattgtaccaaaatagt 19523308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 5852474 - 5852519
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgtacaac 185  Q
    |||||||||||||||||| |||||||||  |||||||||||||||||    
T  5852474 gagaaatgatatttgtac-aaccatttttgtacaacttttgtacaac 5852519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 11728192 - 11728147
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgtacaac 185  Q
    |||||||||| ||||||||| |||||||| |||||||||||||||||    
T  11728192 gagaaatgatgtttgtacaa-ccattttggtacaacttttgtacaac 11728147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 30339993 - 30340038
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgtacaac 185  Q
    |||||||||||||||||| |||||||||  |||||||||||||||||    
T  30339993 gagaaatgatatttgtac-aaccatttttgtacaacttttgtacaac 30340038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 30487540 - 30487495
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgtacaac 185  Q
    |||||||||||||||||||| ||| ||||| ||||||||||||||||    
T  30487540 gagaaatgatatttgtacaa-ccaatttgtgacaacttttgtacaac 30487495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 36383462 - 36383507
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgtacaac 185  Q
    |||||||||||||||||||||  ||||||| ||||||||||||||||    
T  36383462 gagaaatgatatttgtacaaa-gattttgtgacaacttttgtacaac 36383507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 36909914 - 36909869
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgtacaac 185  Q
    |||||||||||||||||||| ||||||||| |||||||||| |||||    
T  36909914 gagaaatgatatttgtacaa-ccattttgtgacaacttttggacaac 36909869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 40721771 - 40721816
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgtacaac 185  Q
    |||||||||||||||||||  |||||||| |||||||||||||||||    
T  40721771 gagaaatgatatttgtacag-ccattttggtacaacttttgtacaac 40721816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 44484727 - 44484682
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgtacaac 185  Q
    |||||||||||||||||||| ||||||||| |||| |||||||||||    
T  44484727 gagaaatgatatttgtacaa-ccattttgtaacaatttttgtacaac 44484682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 179
Target Start/End: Original strand, 5031923 - 5031962
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttg 179  Q
    |||||||||||||||||| ||||||||||| ||||||||||    
T  5031923 gagaaatgatatttgtac-aaccattttgtaacaacttttg 5031962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 47944982 - 47945028
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgtacaac 185  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||    
T  47944982 gagaaatgatatttgtacaaaccatttttgtacaacttttgtacaac 47945028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 47950412 - 47950458
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgtacaac 185  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||    
T  47950412 gagaaatgatatttgtacaaaccatttttgtacaacttttgtacaac 47950458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 33050183 - 33050228
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgtacaac 185  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||    
T  33050183 gagaaatgatatttgtacaa-ccattttgtgacaacttttgtacaac 33050228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 2347130 - 2347085
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgtacaac 185  Q
    |||||||||||||||||||| ||||||||| |||||||| |||||||    
T  2347130 gagaaatgatatttgtacaa-ccattttgtgacaactttggtacaac 2347085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 2600605 - 2600560
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgtacaac 185  Q
    |||||||||||||||||||| |||||||  |||||||||||||||||    
T  2600605 gagaaatgatatttgtacaa-ccattttagtacaacttttgtacaac 2600560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 4971290 - 4971335
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgtacaac 185  Q
    |||||||||||||||||| ||||||||||| ||||||||| ||||||    
T  4971290 gagaaatgatatttgtac-aaccattttgtgacaacttttatacaac 4971335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 11789762 - 11789717
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgtacaac 185  Q
    |||||||||||||||||||| |||||||  |||||||||||||||||    
T  11789762 gagaaatgatatttgtacaa-ccattttagtacaacttttgtacaac 11789717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 28548292 - 28548247
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgtacaac 185  Q
    |||||||||||||||||||| | |||||| |||||||||||||||||    
T  28548292 gagaaatgatatttgtacaa-ctattttggtacaacttttgtacaac 28548247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 29763830 - 29763875
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgtacaac 185  Q
    |||||||||||||||||| ||||||||||| | ||||||||||||||    
T  29763830 gagaaatgatatttgtac-aaccattttgtgataacttttgtacaac 29763875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 30538626 - 30538671
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgtacaac 185  Q
    |||||||||||||||||| ||| |||||| |||||||||||||||||    
T  30538626 gagaaatgatatttgtac-aacaattttggtacaacttttgtacaac 30538671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 30864488 - 30864443
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgtacaac 185  Q
    |||||||||||||||||||| ||| ||||| ||||||||||||||||    
T  30864488 gagaaatgatatttgtacaa-ccaatttgtgacaacttttgtacaac 30864443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 37969931 - 37969976
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgtacaac 185  Q
    |||||||||||||||||| ||| |||||| |||||||||||||||||    
T  37969931 gagaaatgatatttgtac-aactattttgatacaacttttgtacaac 37969976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 44511139 - 44511184
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgtacaac 185  Q
    ||||||||||||| |||||| ||||||||| ||||||||||||||||    
T  44511139 gagaaatgatattcgtacaa-ccattttgtgacaacttttgtacaac 44511184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 48639454 - 48639409
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgtacaac 185  Q
    |||||||||||||||||||| |||||||  |||||||||||||||||    
T  48639454 gagaaatgatatttgtacaa-ccatttttgtacaacttttgtacaac 48639409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 37325889 - 37325846
Alignment:
Q  140 agaaatgatatttgtacaaaccattttgttacaacttttgtacaa 184  Q
    ||||||||||||||||||| ||| ||||| |||||||||||||||    
T  37325889 agaaatgatatttgtacaa-ccaatttgtgacaacttttgtacaa 37325846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 249 - 300
Target Start/End: Original strand, 43105216 - 43105267
Alignment:
Q  249 gaccaataaaaagagagaacaataaatttatctcagaaattgtaccaaaata 300  Q
    |||||||||||||||||||||||||| || || || ||||||||||||||||    
T  43105216 gaccaataaaaagagagaacaataaagttgtcccaaaaattgtaccaaaata 43105267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 185
Target Start/End: Complemental strand, 35972876 - 35972830
Alignment:
Q  138 cgagaaatgatatttgtacaaaccattttgttacaacttttgtacaac 185  Q
    ||||||||||||||||| ||| ||||||||| ||||||||||||||||    
T  35972876 cgagaaatgatatttgttcaa-ccattttgtgacaacttttgtacaac 35972830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 142 - 185
Target Start/End: Complemental strand, 48336506 - 48336464
Alignment:
Q  142 aaatgatatttgtacaaaccattttgttacaacttttgtacaac 185  Q
    ||||||||||||||||| |||||||| |||||||||||||||||    
T  48336506 aaatgatatttgtacaa-ccattttgatacaacttttgtacaac 48336464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 6396327 - 6396372
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgtacaac 185  Q
    ||||||||||||| |||||| |||||||| |||||||||||||||||    
T  6396327 gagaaatgatattggtacaa-ccattttggtacaacttttgtacaac 6396372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 12999893 - 12999848
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgtacaac 185  Q
    |||||||||||||||||||| ||||||| | ||||||||||||||||    
T  12999893 gagaaatgatatttgtacaa-ccattttctaacaacttttgtacaac 12999848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 41564951 - 41564906
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgtacaac 185  Q
    |||||||||||||||||||| |||||||  |||||||||||||||||    
T  41564951 gagaaatgatatttgtacaa-ccatttttgtacaacttttgtacaac 41564906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 42256460 - 42256505
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgtacaac 185  Q
    |||||||||||||||||| ||||||||||| |||||||| |||||||    
T  42256460 gagaaatgatatttgtac-aaccattttgtgacaactttggtacaac 42256505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 180
Target Start/End: Complemental strand, 21433472 - 21433432
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgt 180  Q
    |||||||||||||||||| ||||||||||| |||||||||||    
T  21433472 gagaaatgatatttgtac-aaccattttgtaacaacttttgt 21433432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 23400060 - 23400016
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgtacaa 184  Q
    |||||||||||||||||| |||||||||  ||||||||||||||||    
T  23400060 gagaaatgatatttgtac-aaccatttttatacaacttttgtacaa 23400016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 302
Target Start/End: Original strand, 40053017 - 40053070
Alignment:
Q  249 gaccaataaaaagagagaacaataaatttatctcagaaattgtaccaaaatagt 302  Q
    ||||||| |||||||||||||| ||| || ||||| | ||||||||||||||||    
T  40053017 gaccaatgaaaagagagaacaacaaagttgtctcaaagattgtaccaaaatagt 40053070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 302
Target Start/End: Original strand, 43757698 - 43757750
Alignment:
Q  250 accaataaaaagagagaacaataaatttatctcagaaattgtaccaaaatagt 302  Q
    |||||| |||||||||||||| ||| || ||||| ||||| ||||||||||||    
T  43757698 accaatgaaaagagagaacaacaaagttgtctcaaaaattataccaaaatagt 43757750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 185
Target Start/End: Complemental strand, 50035606 - 50035563
Alignment:
Q  141 gaaatgatatttgtacaaaccattttgttacaacttttgtacaac 185  Q
    |||||||||||||||||| ||||||||| ||||||||| ||||||    
T  50035606 gaaatgatatttgtacaa-ccattttgtgacaacttttatacaac 50035563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 5742728 - 5742683
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgtacaac 185  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||    
T  5742728 gagaaatgatatttgtacaa-ccattttggtacaacttttgtacaac 5742683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 137 - 180
Target Start/End: Complemental strand, 10644875 - 10644833
Alignment:
Q  137 tcgagaaatgatatttgtacaaaccattttgttacaacttttgt 180  Q
    |||||||||||||||||||| ||||||||||| |||||||||||    
T  10644875 tcgagaaatgatatttgtac-aaccattttgtaacaacttttgt 10644833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 21649239 - 21649194
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgtacaac 185  Q
    |||||||||||||||||||| |||||||  |||||||||||||||||    
T  21649239 gagaaatgatatttgtacaa-ccatttttgtacaacttttgtacaac 21649194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 27300346 - 27300391
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgtacaac 185  Q
    |||||||||||||||||| |||||||||  |||||||||||||||||    
T  27300346 gagaaatgatatttgtac-aaccatttttgtacaacttttgtacaac 27300391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 28156203 - 28156248
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgtacaac 185  Q
    |||||||||||||||||| |||||||||| ||||| |||||||||||    
T  28156203 gagaaatgatatttgtac-aaccattttggtacaatttttgtacaac 28156248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 32674303 - 32674258
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgtacaac 185  Q
    |||||||||||||||||||| |||||||| || ||||||||||||||    
T  32674303 gagaaatgatatttgtacaa-ccattttggtataacttttgtacaac 32674258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 35701898 - 35701853
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgtacaac 185  Q
    |||||||||||||||||||| |||||||  |||||||||||||||||    
T  35701898 gagaaatgatatttgtacaa-ccatttttgtacaacttttgtacaac 35701853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 35937583 - 35937538
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgtacaac 185  Q
    |||||||||||||||||||| ||||||||| |||||||||| |||||    
T  35937583 gagaaatgatatttgtacaa-ccattttgtaacaacttttggacaac 35937538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 41273515 - 41273560
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgtacaac 185  Q
    ||||||||||||||||||||| || ||||| ||||||||||||||||    
T  41273515 gagaaatgatatttgtacaaa-caatttgtgacaacttttgtacaac 41273560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 22203286 - 22203242
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgtacaa 184  Q
    |||||||||||||||||| |||||||||  ||||||||||||||||    
T  22203286 gagaaatgatatttgtac-aaccatttttgtacaacttttgtacaa 22203242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 37784445 - 37784401
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgtacaa 184  Q
    |||||||||||||||||| |||||||||| || |||||||||||||    
T  37784445 gagaaatgatatttgtac-aaccattttggtataacttttgtacaa 37784401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 299
Target Start/End: Complemental strand, 38939151 - 38939102
Alignment:
Q  250 accaataaaaagagagaacaataaatttatctcagaaattgtaccaaaat 299  Q
    |||||| | |||||||||||| ||| |||||||| |||||||||||||||    
T  38939151 accaatgagaagagagaacaacaaagttatctcaaaaattgtaccaaaat 38939102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 179
Target Start/End: Original strand, 1248253 - 1248292
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttg 179  Q
    |||||||||||||||||| ||||||||| ||||||||||||    
T  1248253 gagaaatgatatttgtac-aaccattttcttacaacttttg 1248292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 183
Target Start/End: Original strand, 20288533 - 20288576
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgtaca 183  Q
    |||||||||||||||||| ||||| ||||| ||||||||||||||    
T  20288533 gagaaatgatatttgtac-aaccaatttgtgacaacttttgtaca 20288576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 183
Target Start/End: Original strand, 21075162 - 21075205
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgtaca 183  Q
    |||||||||||||||||| ||||| ||||| ||||||||||||||    
T  21075162 gagaaatgatatttgtac-aaccaatttgtgacaacttttgtaca 21075205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 185
Target Start/End: Complemental strand, 37568687 - 37568640
Alignment:
Q  137 tcgagaaatgatatttgtacaaaccattttgttacaacttttgtacaac 185  Q
    ||||||||||||||||||||||| |||||||| |||| |||| ||||||    
T  37568687 tcgagaaatgatatttgtacaaa-cattttgtgacaatttttatacaac 37568640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 178
Target Start/End: Complemental strand, 43602495 - 43602456
Alignment:
Q  138 cgagaaatgatatttgtacaaaccattttgttacaactttt 178  Q
    ||||||||||||||||||| |||||||||| ||||||||||    
T  43602495 cgagaaatgatatttgtac-aaccattttgctacaactttt 43602456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 3339570 - 3339525
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgtacaac 185  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||    
T  3339570 gagaaatgatatttgtacaa-ccattttgtgacaacttttgtacaac 3339525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 139 - 178
Target Start/End: Complemental strand, 28965911 - 28965873
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaactttt 178  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  28965911 gagaaatgatatttgtacaa-ccattttgttacaactttt 28965873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 180
Target Start/End: Complemental strand, 25127904 - 25127864
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgt 180  Q
    |||||||||||||||||| ||||||||||| |||||||||||    
T  25127904 gagaaatgatatttgtac-aaccattttgtaacaacttttgt 25127864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 182
Target Start/End: Original strand, 2056782 - 2056825
Alignment:
Q  138 cgagaaatgatatttgtacaaaccattttgttacaacttttgtac 182  Q
    ||||||||||||||||||| ||||| ||||| |||||||||||||    
T  2056782 cgagaaatgatatttgtac-aaccaatttgtgacaacttttgtac 2056825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 11327108 - 11327153
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgtacaac 185  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||    
T  11327108 gagaaatgatatttgtacaa-ccattttgtgacaacttttgtacaac 11327153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 54233539 - 54233494
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgtacaac 185  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||    
T  54233539 gagaaatgatatttgtacaa-ccatttttttacaacttttgtacaac 54233494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 249 - 302
Target Start/End: Original strand, 16295575 - 16295628
Alignment:
Q  249 gaccaataaaaagagagaacaataaatttatctcagaaattgtaccaaaatagt 302  Q
    |||||||||||||||||||||| ||| || ||||| || |||||||||||||||    
T  16295575 gaccaataaaaagagagaacaacaaagttgtctcaaaagttgtaccaaaatagt 16295628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 141 - 184
Target Start/End: Original strand, 38471644 - 38471686
Alignment:
Q  141 gaaatgatatttgtacaaaccattttgttacaacttttgtacaa 184  Q
    |||||||||||||||||| |||||||| ||||||||||||||||    
T  38471644 gaaatgatatttgtacaa-ccattttggtacaacttttgtacaa 38471686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 2280177 - 2280222
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgtacaac 185  Q
    |||||||||||||||||| |||||||||  |||||||||||||||||    
T  2280177 gagaaatgatatttgtac-aaccattttagtacaacttttgtacaac 2280222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 8254027 - 8254072
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgtacaac 185  Q
    |||||||||||||||||| ||||||||||| |||||||| |||||||    
T  8254027 gagaaatgatatttgtac-aaccattttgtgacaactttggtacaac 8254072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 14839116 - 14839071
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgtacaac 185  Q
    |||||||||||||||||||| |||||||  |||||||||||||||||    
T  14839116 gagaaatgatatttgtacaa-ccatttttgtacaacttttgtacaac 14839071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 16295464 - 16295509
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgtacaac 185  Q
    |||||||||||||||||| ||||| |||| |||||||||||||||||    
T  16295464 gagaaatgatatttgtac-aaccaatttgatacaacttttgtacaac 16295509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 32931989 - 32931944
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgtacaac 185  Q
    |||||||||||||||||||| ||| ||||| ||||||||||||||||    
T  32931989 gagaaatgatatttgtacaa-ccaatttgtgacaacttttgtacaac 32931944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 36818956 - 36819001
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgtacaac 185  Q
    |||||||||||||||||| ||||| ||||| ||||||||||||||||    
T  36818956 gagaaatgatatttgtac-aaccaatttgtgacaacttttgtacaac 36819001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 181
Target Start/End: Original strand, 48405410 - 48405451
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgta 181  Q
    |||||||||||||||||| ||||||||||| ||||||||||||    
T  48405410 gagaaatgatatttgtac-aaccattttgtgacaacttttgta 48405451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 180
Target Start/End: Complemental strand, 29573427 - 29573387
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgt 180  Q
    |||||||||||||||||| ||||||||||| |||||||||||    
T  29573427 gagaaatgatatttgtac-aaccattttgtaacaacttttgt 29573387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 185
Target Start/End: Original strand, 44689793 - 44689837
Alignment:
Q  140 agaaatgatatttgtacaaaccattttgttacaacttttgtacaac 185  Q
    ||||||||||||||||||| |||||||  |||||||||||||||||    
T  44689793 agaaatgatatttgtacaa-ccatttttgtacaacttttgtacaac 44689837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 48944781 - 48944737
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgtacaa 184  Q
    |||||||||||||||||| ||||||||| | |||||||||||||||    
T  48944781 gagaaatgatatttgtac-aaccattttctaacaacttttgtacaa 48944737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 180
Target Start/End: Original strand, 47101523 - 47101562
Alignment:
Q  140 agaaatgatatttgtacaaaccattttgttacaacttttgt 180  Q
    ||||||||||||||||| ||||||||||| |||||||||||    
T  47101523 agaaatgatatttgtac-aaccattttgtgacaacttttgt 47101562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0592 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0592
Description:

Target: scaffold0592; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 249 - 302
Target Start/End: Original strand, 1021 - 1074
Alignment:
Q  249 gaccaataaaaagagagaacaataaatttatctcagaaattgtaccaaaatagt 302  Q
    ||||||| |||||||||||||| ||| |||||||| || |||||||||||||||    
T  1021 gaccaatgaaaagagagaacaacaaagttatctcaaaagttgtaccaaaatagt 1074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 249 - 302
Target Start/End: Complemental strand, 54622 - 54569
Alignment:
Q  249 gaccaataaaaagagagaacaataaatttatctcagaaattgtaccaaaatagt 302  Q
    |||||||||||||||||||||| ||| || ||||| | ||||||||||||||||    
T  54622 gaccaataaaaagagagaacaacaaagttgtctcaaagattgtaccaaaatagt 54569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 249 - 302
Target Start/End: Original strand, 33777005 - 33777058
Alignment:
Q  249 gaccaataaaaagagagaacaataaatttatctcagaaattgtaccaaaatagt 302  Q
    |||||||||||||||||||||| ||  ||||| || ||||||||||||||||||    
T  33777005 gaccaataaaaagagagaacaacaaggttatcccaaaaattgtaccaaaatagt 33777058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 139 - 184
Target Start/End: Original strand, 35037609 - 35037653
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgtacaa 184  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||    
T  35037609 gagaaatgatatttgtacaa-ccattttgatacaacttttgtacaa 35037653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 3475869 - 3475914
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgtacaac 185  Q
    |||||||||||||||||| ||||||||| | ||||||||||||||||    
T  3475869 gagaaatgatatttgtac-aaccattttatgacaacttttgtacaac 3475914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 5208398 - 5208353
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgtacaac 185  Q
    |||||||||||||||||||| ||| ||||| ||||||||||||||||    
T  5208398 gagaaatgatatttgtacaa-ccaatttgtgacaacttttgtacaac 5208353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 26442461 - 26442416
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgtacaac 185  Q
    |||||||||||||||||||| |||||||| ||||||||||| |||||    
T  26442461 gagaaatgatatttgtacaa-ccattttggtacaacttttgcacaac 26442416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 29863551 - 29863596
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgtacaac 185  Q
    |||||||||||||||||| |||||||||| || ||||||||||||||    
T  29863551 gagaaatgatatttgtac-aaccattttggtataacttttgtacaac 29863596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 31318753 - 31318798
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgtacaac 185  Q
    |||||||||||||||||| |||||||||| ||||| |||||||||||    
T  31318753 gagaaatgatatttgtac-aaccattttggtacaatttttgtacaac 31318798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 55268072 - 55268027
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgtacaac 185  Q
    |||||||||||||||||||| ||| ||||| ||||||||||||||||    
T  55268072 gagaaatgatatttgtacaa-ccaatttgtgacaacttttgtacaac 55268027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 184
Target Start/End: Original strand, 1796366 - 1796410
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgtacaa 184  Q
    |||||||||||||||||| ||||| ||||| |||||||||||||||    
T  1796366 gagaaatgatatttgtac-aaccaatttgtgacaacttttgtacaa 1796410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 7037555 - 7037511
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgtacaa 184  Q
    |||||||||||||||||| ||||| ||||| |||||||||||||||    
T  7037555 gagaaatgatatttgtac-aaccaatttgtgacaacttttgtacaa 7037511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 180
Target Start/End: Complemental strand, 51359861 - 51359821
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgt 180  Q
    |||||||||||||||||| ||||||||||| |||||||||||    
T  51359861 gagaaatgatatttgtac-aaccattttgtgacaacttttgt 51359821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 178
Target Start/End: Complemental strand, 169574 - 169535
Alignment:
Q  138 cgagaaatgatatttgtacaaaccattttgttacaactttt 178  Q
    ||||||||||||||||||| ||||||||||| |||||||||    
T  169574 cgagaaatgatatttgtac-aaccattttgtgacaactttt 169535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 179
Target Start/End: Original strand, 8810571 - 8810610
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttg 179  Q
    |||||||||||||||||| ||||||||| ||||||||||||    
T  8810571 gagaaatgatatttgtac-aaccattttcttacaacttttg 8810610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 185
Target Start/End: Complemental strand, 43307438 - 43307395
Alignment:
Q  141 gaaatgatatttgtacaaaccattttgttacaacttttgtacaac 185  Q
    |||||||||||||||||| |||||||  |||||||||||||||||    
T  43307438 gaaatgatatttgtacaa-ccatttttgtacaacttttgtacaac 43307395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 178
Target Start/End: Complemental strand, 7077414 - 7077375
Alignment:
Q  138 cgagaaatgatatttgtacaaaccattttgttacaactttt 178  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  7077414 cgagaaatgatatttgtacaa-ccattttgttacaactttt 7077375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 142 - 185
Target Start/End: Original strand, 5005105 - 5005148
Alignment:
Q  142 aaatgatatttgtacaaaccattttgttacaacttttgtacaac 185  Q
    |||||||||||| ||||||||||||| |||||| ||||||||||    
T  5005105 aaatgatatttgcacaaaccattttggtacaacatttgtacaac 5005148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 1107981 - 1108026
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgtacaac 185  Q
    |||||||||||||||||| | | ||||||||||||||||||||||||    
T  1107981 gagaaatgatatttgtacga-ctattttgttacaacttttgtacaac 1108026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 3031834 - 3031879
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgtacaac 185  Q
    |||||||||||||||||| |||||||||  |||||||||||||||||    
T  3031834 gagaaatgatatttgtac-aaccatttttgtacaacttttgtacaac 3031879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 9594478 - 9594523
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgtacaac 185  Q
    |||||||||||||||||| ||||| ||||| ||||||||||||||||    
T  9594478 gagaaatgatatttgtac-aaccaatttgtgacaacttttgtacaac 9594523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 9599799 - 9599754
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgtacaac 185  Q
    |||||||||||||||||||| ||| ||||| ||||||||||||||||    
T  9599799 gagaaatgatatttgtacaa-ccaatttgtgacaacttttgtacaac 9599754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 14914372 - 14914417
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgtacaac 185  Q
    |||||||||||||||||| ||||||||||| |||||||||| |||||    
T  14914372 gagaaatgatatttgtac-aaccattttgtgacaacttttggacaac 14914417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 18729360 - 18729315
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgtacaac 185  Q
    |||||||||||||||||||| |||||||  |||||||||||||||||    
T  18729360 gagaaatgatatttgtacaa-ccatttttgtacaacttttgtacaac 18729315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 28501592 - 28501637
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgtacaac 185  Q
    |||||||||||||||||| ||||||||||| |||| |||||||||||    
T  28501592 gagaaatgatatttgtac-aaccattttgtgacaatttttgtacaac 28501637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 29765830 - 29765875
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgtacaac 185  Q
    |||||||||||||||||| |||||||||  |||||||||||||||||    
T  29765830 gagaaatgatatttgtac-aaccattttagtacaacttttgtacaac 29765875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 30574448 - 30574403
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgtacaac 185  Q
    |||||||||||||||||||| ||| ||||| ||||||||||||||||    
T  30574448 gagaaatgatatttgtacaa-ccaatttgtgacaacttttgtacaac 30574403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 39032675 - 39032630
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgtacaac 185  Q
    |||||||||||||||||||| |||||||  |||||||||||||||||    
T  39032675 gagaaatgatatttgtacaa-ccatttttgtacaacttttgtacaac 39032630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 3263579 - 3263535
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgtacaa 184  Q
    |||||||||||||||||| ||||| ||||| |||||||||||||||    
T  3263579 gagaaatgatatttgtac-aaccaatttgtgacaacttttgtacaa 3263535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 180
Target Start/End: Original strand, 18695318 - 18695358
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgt 180  Q
    |||||||||||||||||| ||||||||||| |||||||||||    
T  18695318 gagaaatgatatttgtac-aaccattttgtaacaacttttgt 18695358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 25585527 - 25585483
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgtacaa 184  Q
    |||||||||||||||||| |||||||||  ||||||||||||||||    
T  25585527 gagaaatgatatttgtac-aaccatttttgtacaacttttgtacaa 25585483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 179
Target Start/End: Complemental strand, 42225837 - 42225798
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttg 179  Q
    ||||||||||||||||| |||||||||||| ||||||||||    
T  42225837 gagaaatgatatttgta-aaaccattttgtaacaacttttg 42225798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0651 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0651
Description:

Target: scaffold0651; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 4917 - 4872
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgtacaac 185  Q
    |||||||||||||||||||| |||||||| ||||| |||||||||||    
T  4917 gagaaatgatatttgtacaa-ccattttggtacaatttttgtacaac 4872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 145061 - 145106
Alignment:
Q  139 gagaaatgatatttgtacaaaccattttgttacaacttttgtacaac 185  Q
    |||||||||||||||||| |||||||||  |||||||||||||||||    
T  145061 gagaaatgatatttgtac-aaccatttttgtacaacttttgtacaac 145106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 178
Target Start/End: Complemental strand, 72242 - 72202
Alignment:
Q  137 tcgagaaatgatatttgtacaaaccattttgttacaactttt 178  Q
    |||||||||||||||||||| ||||||||||| |||||||||    
T  72242 tcgagaaatgatatttgtac-aaccattttgtaacaactttt 72202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University