View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_213 (Length: 306)
Name: NF10145A_low_213
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_213 |
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Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 31557028 - 31557330
Alignment:
| Q |
1 |
acatcgacataaaaggtactataagaaaataaaactgtattgactatatagtcaataatattatatcatataatagacaaagcacatgtcaatttacaat |
100 |
Q |
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| T |
31557028 |
acatcgacataaaaggtactataagaaaataaaactgtattgactatatagtcaataatattatatcatataatagacaaagcacatgtcaatttacaat |
31557127 |
T |
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| Q |
101 |
gccccactttgtaataataggttacacaattcctaagggaatgaaggtgattgcatcatttcgtgctgtgcatttgaatcctgaacatttcaaagatgct |
200 |
Q |
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| T |
31557128 |
gccccactttgtaataataggttacacaattcctaagggaatgaaggtgattgcatcatttcgtgctgtgcatttgaatcctgaacatttcaaagatgct |
31557227 |
T |
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| Q |
201 |
cgcaccttcaatccatggagatggcaggtacatgattagnnnnnnnattattgctgatctaattaatgttatgttgagttacactgcactcttcagttgc |
300 |
Q |
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| T |
31557228 |
cgcaccttcaatccatggagatggcaggtacatgattag-ttttttattattgctgatctaattaatgttatgttgagttacactacactcttcagttgc |
31557326 |
T |
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| Q |
301 |
ttat |
304 |
Q |
| |
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|||| |
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| T |
31557327 |
ttat |
31557330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 151 - 230
Target Start/End: Original strand, 35478967 - 35479046
Alignment:
| Q |
151 |
ttgcatcatttcgtgctgtgcatttgaatcctgaacatttcaaagatgctcgcaccttcaatccatggagatggcaggta |
230 |
Q |
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| T |
35478967 |
ttgcatcatttcgtgccgtacatctaaaccccgatcatttcaaagatgcgcgcaccttcaatccatggagatggcaggta |
35479046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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