View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_217 (Length: 305)
Name: NF10145A_low_217
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_217 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 10 - 303
Target Start/End: Original strand, 47046518 - 47046812
Alignment:
| Q |
10 |
ctggtggtgactgaatcaaagttttaaatgcat----actctcagccattgatttagatctaggtcattttagtgtacagcttttatgaggcttcatcgg |
105 |
Q |
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| T |
47046518 |
ctggtggtgactgaatcaaagttt-aaatgcatcaaaactctcagccattgatttagatctaggtcattttagtgtacagcttttatgaggcttcatcgg |
47046616 |
T |
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| Q |
106 |
ccagtcacattttcaaaagaacttttttgcaaagttgggctctattctatccttaataacacttgtgatgaataaatgaaaagacnnnnnnnntacttgt |
205 |
Q |
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| T |
47046617 |
ctagtcacattttcaaaagaacttttttgcaaagttgggctctattctatccttaataacacttgtgatgaataaatgaaaagac--aaaaaatacttgt |
47046714 |
T |
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| Q |
206 |
gatgaatgcttcctcccaagtttcatgtttcgaccatgatggagaaacttctcgaaatgggattccttcattcctgcataccctgcacacgtgtaaat |
303 |
Q |
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| T |
47046715 |
gatgaacgcttcctcccaagtttcatgttccgaccatgatggagaaacttctcgaaatgggattccttcattcctgcataccctgcacacgtgtaaat |
47046812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 12 - 303
Target Start/End: Original strand, 10718313 - 10718605
Alignment:
| Q |
12 |
ggtggtgactgaatcaaagttttaaatgcat----actctcagccattgatttagatctaggtcattttagtgtacagcttttatgaggcttcatcggcc |
107 |
Q |
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||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
10718313 |
ggtggtggctgaatcaaagttt-aaatgcatcaaaactctcagccattgatttagatctaggtcattttagtgtacagcttttatgaggcttaatcggcc |
10718411 |
T |
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| Q |
108 |
agtcacattttcaaaagaacttttttgcaaagttgggctctattctatccttaataacacttgtgatgaataaatgaaaagacnnnnnnnntacttgtga |
207 |
Q |
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| T |
10718412 |
agtcacattttcaaaagaaattttttgcaaagttgggctctattctatccttaataacacttgagatgaataaatgaaaagac--aaaaaatacttgtga |
10718509 |
T |
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| Q |
208 |
tgaatgcttcctcccaagtttcatgtttcgaccatgatggagaaacttctcgaaatgggattccttcattcctgcataccctgcacacgtgtaaat |
303 |
Q |
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| T |
10718510 |
tgaatgcttcctcccaagtttcatgttccgaccatgatggagaaacttctcgaaatgggattccttcattcctgcataccctgcacacgtgtaaat |
10718605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 10 - 272
Target Start/End: Complemental strand, 10715457 - 10715192
Alignment:
| Q |
10 |
ctggtggtgactgaatcaaagttttaaatgcat----actctcagccattgatttagatctaggtcattttagtgtacagcttttatgaggcttcatcgg |
105 |
Q |
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| T |
10715457 |
ctggtggtgactgaatcaaagtat-aaatgcatcaaaactctcagccattgatttagatctaggtcattttagtgtacaacttttatgaggcttcatcgg |
10715359 |
T |
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| Q |
106 |
ccagtcacattttcaaaagaacttttttgcaaagttgggctctattctatccttaataacacttgtgatgaataaatgaaaagacnnnnnnnntacttgt |
205 |
Q |
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| T |
10715358 |
ctagtcacattttcaaaagaacttttttgcaaagttgggcaatattccatccttaataacacttgtgatgaataaatgaaaagacaaaaaaaatactttt |
10715259 |
T |
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| Q |
206 |
gatgaatgcttcctcccaagtttcatgtttcgaccatgatggagaaacttctcgaaatgggattcct |
272 |
Q |
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| T |
10715258 |
gatgaatgtttcctcccaagtttaatgttccgaccatgatggagaaacttctcgaaatgggattcct |
10715192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 199 - 303
Target Start/End: Original strand, 47017737 - 47017841
Alignment:
| Q |
199 |
tacttgtgatgaatgcttcctcccaagtttcatgtttcgaccatgatggagaaacttctcgaaatgggattccttcattcctgcataccctgcacacgtg |
298 |
Q |
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| T |
47017737 |
tacttgtgatgaatgcttcttcccagatttcatgttttgaccatgatggagcaacttctcggcatgaaattccttcactcctgcatgccctgtacaagtg |
47017836 |
T |
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| Q |
299 |
taaat |
303 |
Q |
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| T |
47017837 |
caaat |
47017841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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