View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_218 (Length: 305)
Name: NF10145A_low_218
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_218 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 14 - 305
Target Start/End: Original strand, 4176250 - 4176541
Alignment:
| Q |
14 |
agaccgaacaccaagcctgaaaattaaacaatgaataaagtgttatcattaaagtgatgatggtggataaataatagattgaggaactagagttgaaacc |
113 |
Q |
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| T |
4176250 |
agaccgaacaccaagcctggaaattaaacaatgaataaagtgttatcattagagtgatgatggtggataaataatagattgaggaactagagttgaaacc |
4176349 |
T |
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| Q |
114 |
tgtgaagggatagtgcagttgcaaggcctgctatcccaccacccacgattacaacatgttcctttctgacatcggaagattgagccttgattgttaattt |
213 |
Q |
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| T |
4176350 |
tgtgaagggatagtgcagttgcaaggcctgctatcccaccacccacgattacaacatgttcctttctgacatcagaagattgagccttgattgttaattt |
4176449 |
T |
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| Q |
214 |
ggaatatctgagggatccaattctggcacgacaaggcgatgatgtaagaattcgtttaagaaacataaaagacgaagttgttgtagccatga |
305 |
Q |
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| T |
4176450 |
ggaatatctgagggatccaattctggcacgacaaggcgatgatgtaagaattcgtttaagaaacataaaagacgaagttgttgtagccatga |
4176541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 100 - 248
Target Start/End: Original strand, 4172199 - 4172341
Alignment:
| Q |
100 |
ctagagttgaaacctgtgaagggatagtgcagttgcaaggcctgctatcccaccacccacgattacaacatgttcctttctgacatcggaagattgagcc |
199 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||| || ||||||||||||||| || | ||||||||| || |
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| T |
4172199 |
ctagagttgaaacctgtgaagggatagagcagttgcaaggcctgcaatgccaccacccacaatgacaacatgttccttttgga---ctgaagattgaacc |
4172295 |
T |
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| Q |
200 |
ttgattgttaatttggaatatctgagggatccaattctggcacgacaag |
248 |
Q |
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| T |
4172296 |
ttga---ttaatttggaacttctgagagatccaattctggtatgacaag |
4172341 |
T |
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