View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10145A_low_22 (Length: 455)
Name: NF10145A_low_22
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_22 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 157; Significance: 3e-83; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 277 - 437
Target Start/End: Complemental strand, 31069397 - 31069237
Alignment:
| Q |
277 |
ctattatcttcttatttatattaacgaaatgtgttgagatgaatcttgtgatattccttgaccatttttggaagaactgaagcaatttctttcattttgt |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31069397 |
ctattatcttcttatttatattaacgaaatgtgttgagatgaatcttgtgatattccttgaccatttttggaagaactgaagcaatttctttcattttgt |
31069298 |
T |
|
| Q |
377 |
cttcggtgttttctatgaaacttgaatcgatattggtgaaatcatcttgatgggtgattgt |
437 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
31069297 |
cttcggtgttttctatgaaacttgaatcgatattggtgaaatcatcttgatgggtgtttgt |
31069237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 150 - 214
Target Start/End: Complemental strand, 31069524 - 31069460
Alignment:
| Q |
150 |
cacaagtgaagaatagggggaatggttttgaagcttaacatcaccttgctgaaggaagaagacat |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31069524 |
cacaagtgaagaatagggggaatggttttgaagcttaacatcaccttgctgaaggaagaagacat |
31069460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 7 - 78
Target Start/End: Complemental strand, 31069667 - 31069596
Alignment:
| Q |
7 |
taaattattcttgagttctaccgtcatttctcttcccacaaaatctttcaagtagcagaagaacaacttcat |
78 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
31069667 |
taaatcattcttgagttctaccgtcatttctcttcccgcaaaatctttcaagtagcagaagaacaacttcat |
31069596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 37614398 - 37614334
Alignment:
| Q |
14 |
ttcttgagttctaccgtcatttctcttcccacaaaatctttcaagtagcagaagaacaacttcat |
78 |
Q |
| |
|
||||||||||| ||||||| |||||||||||| |||||||| ||||| ||||||||| |||||| |
|
|
| T |
37614398 |
ttcttgagttcaaccgtcacttctcttcccaccaaatctttgaagtacgagaagaacagcttcat |
37614334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 42440506 - 42440446
Alignment:
| Q |
14 |
ttcttgagttctaccgtcatttctcttcccacaaaatctttcaagtagcagaagaacaact |
74 |
Q |
| |
|
||||||||||||||||| | |||||||||||| |||||||| ||||| |||||||||||| |
|
|
| T |
42440506 |
ttcttgagttctaccgtaacttctcttcccaccaaatctttgaagtatgagaagaacaact |
42440446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 313 - 431
Target Start/End: Original strand, 11592990 - 11593109
Alignment:
| Q |
313 |
agatgaatcttgtgatattccttgacc-atttttggaagaactgaagcaatttctttcattttgtcttcggtgttttctatgaaacttgaatcgatattg |
411 |
Q |
| |
|
||||| ||||||||| ||||||||||| || ||||||||||| |||||| |||||| ||| |||||| ||||||||||||||||| ||||| || ||| |
|
|
| T |
11592990 |
agatgcatcttgtgaaattccttgacccatgtttggaagaacagaagcagcttctttgattctgtctttggtgttttctatgaaaccagaatccatgttg |
11593089 |
T |
|
| Q |
412 |
gtgaaatcatcttgatgggt |
431 |
Q |
| |
|
||| |||| | ||||||||| |
|
|
| T |
11593090 |
gtgtaatcttgttgatgggt |
11593109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 313 - 431
Target Start/End: Complemental strand, 11645129 - 11645010
Alignment:
| Q |
313 |
agatgaatcttgtgatattccttgacc-atttttggaagaactgaagcaatttctttcattttgtcttcggtgttttctatgaaacttgaatcgatattg |
411 |
Q |
| |
|
||||| ||||||||| ||||||||||| || ||||||||||| |||||| |||||| ||| |||||| ||||||||||||||||| ||||| || ||| |
|
|
| T |
11645129 |
agatgcatcttgtgaaattccttgacccatgtttggaagaacagaagcagcttctttgattctgtctttggtgttttctatgaaaccagaatccatgttg |
11645030 |
T |
|
| Q |
412 |
gtgaaatcatcttgatgggt |
431 |
Q |
| |
|
||| |||| | ||||||||| |
|
|
| T |
11645029 |
gtgtaatcttgttgatgggt |
11645010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University