View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_220 (Length: 303)

Name: NF10145A_low_220
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_220
NF10145A_low_220
[»] chr7 (2 HSPs)
chr7 (232-291)||(6951873-6951932)
chr7 (232-291)||(12332803-12332862)
[»] chr4 (1 HSPs)
chr4 (232-291)||(18186157-18186216)
[»] chr3 (1 HSPs)
chr3 (232-291)||(13242713-13242772)
[»] chr5 (2 HSPs)
chr5 (232-291)||(12594197-12594256)
chr5 (234-291)||(39507974-39508031)


Alignment Details
Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 232 - 291
Target Start/End: Original strand, 6951873 - 6951932
Alignment:
Q  232 tctaataatttgaaaatttcaattcaaatcgactaagaattaataagaatccggtatatt 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6951873 tctaataatttgaaaatttcaattcaaatcgactaagaattaataagaatccggtatatt 6951932  T

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Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 232 - 291
Target Start/End: Complemental strand, 12332862 - 12332803
Alignment:
Q  232 tctaataatttgaaaatttcaattcaaatcgactaagaattaataagaatccggtatatt 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12332862 tctaataatttgaaaatttcaattcaaatcgactaagaattaataagaatccggtatatt 12332803  T

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Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 232 - 291
Target Start/End: Complemental strand, 18186216 - 18186157
Alignment:
Q  232 tctaataatttgaaaatttcaattcaaatcgactaagaattaataagaatccggtatatt 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18186216 tctaataatttgaaaatttcaattcaaatcgactaagaattaataagaatccggtatatt 18186157  T

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Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 232 - 291
Target Start/End: Original strand, 13242713 - 13242772
Alignment:
Q  232 tctaataatttgaaaatttcaattcaaatcgactaagaattaataagaatccggtatatt 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13242713 tctaataatttgaaaatttcaattcaaatcgactaagaattaataagaatccggtatatt 13242772  T

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Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 232 - 291
Target Start/End: Original strand, 12594197 - 12594256
Alignment:
Q  232 tctaataatttgaaaatttcaattcaaatcgactaagaattaataagaatccggtatatt 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  12594197 tctaataatttgaaaatttcaattcaaatcgactaagaattaataagaatctggtatatt 12594256  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 234 - 291
Target Start/End: Original strand, 39507974 - 39508031
Alignment:
Q  234 taataatttgaaaatttcaattcaaatcgactaagaattaataagaatccggtatatt 291  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  39507974 taataatttgaaaatttcaattcaaatcgactaaaaattaataagaatccggtatatt 39508031  T

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