View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_224 (Length: 302)
Name: NF10145A_low_224
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_224 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 9 - 302
Target Start/End: Original strand, 15263030 - 15263323
Alignment:
| Q |
9 |
tggtgtttgccaggacctatagatacttggaatgagattcttctagagatgatgaagaagtgggattggaagggacaaccaaggagtgaagagtgggaca |
108 |
Q |
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| T |
15263030 |
tggtgtttgcctggacctatagatacttggaatgagatttttctagagatgatgaagaagtgggattggaagggacaaccaaggagtgaagagtgagaca |
15263129 |
T |
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| Q |
109 |
ttcattcctcttagcttgttaatttattaatcaaatatttccatagaaagattatgtttattatgttcattctctgatcttcttccataatggcacatat |
208 |
Q |
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| T |
15263130 |
ttcattcctcttagcttgttaatttattaatctaatctttccatagaaagattatgtttattatgttcattctctgatcttcttccataatggcacatat |
15263229 |
T |
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| Q |
209 |
gttggtgggagacttttgtttttagtttctagacaaggaagatgttttagtgtttgaaagaaacttgaaacgatatgtagatattaaactttga |
302 |
Q |
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| T |
15263230 |
gttggtgggagacttttgtttttagtttctagacaaggaagatgttttagtgtttgaaagcaacttggaacaatatgtagatattaaactttga |
15263323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 15287396 - 15287332
Alignment:
| Q |
9 |
tggtgtttgccaggacctatagatacttggaatgagattcttctagagatgatgaagaagtggga |
73 |
Q |
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| T |
15287396 |
tggtgcttgccaggacctatagatacttggaatgagatttttgtagagatgatgaagaggtggga |
15287332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 15284519 - 15284578
Alignment:
| Q |
9 |
tggtgtttgccaggacctatagatacttggaatgagattcttctagagatgatgaagaag |
68 |
Q |
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| T |
15284519 |
tggtgcttgccaggacctatagatacttggaatgagattttgttggagatgatgaagaag |
15284578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 15256725 - 15256661
Alignment:
| Q |
9 |
tggtgtttgccaggacctatagatacttggaatgagattcttctagagatgatgaagaagtggga |
73 |
Q |
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| T |
15256725 |
tggtgtttgcctggacctatagacacatggaatgagatttttctggagattatgaagaaatggga |
15256661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 11806959 - 11806900
Alignment:
| Q |
9 |
tggtgtttgccaggacctatagatacttggaatgagattcttctagagatgatgaagaag |
68 |
Q |
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| T |
11806959 |
tggtgcttgccaggacctattgatacttggaatgagatttttttggagatgatgaagaag |
11806900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 51383704 - 51383763
Alignment:
| Q |
9 |
tggtgtttgccaggacctatagatacttggaatgagattcttctagagatgatgaagaag |
68 |
Q |
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| T |
51383704 |
tggtgtttgccaggacctatagacacttggaatgagatttttttggagatcatgaagaag |
51383763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 44248041 - 44247983
Alignment:
| Q |
9 |
tggtgtttgccaggacctatagatacttggaatgagattcttctagagatgatgaagaa |
67 |
Q |
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| T |
44248041 |
tggtgcttgccaggacctatagatatttggaatgagatttttttgcagatgatgaagaa |
44247983 |
T |
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