View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10145A_low_225 (Length: 301)
Name: NF10145A_low_225
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_225 |
 | |
|
| [»] chr8 (4 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 3683230 - 3682935
Alignment:
| Q |
1 |
agaaaaaatgagggtctgtgatagtatgctttagaatcaccacagcacaaaaagcaagcaatattcccaacaagatcttcactttcattgacctcttact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3683230 |
agaaaaaatgagggtctgtgatagtatgctttagaatcaccacagcacaaaaagcaagcaatattcccaacaagatcttcactttcattgacctcttact |
3683131 |
T |
|
| Q |
101 |
caaccatccaatcaaaacattcactgcaaaatccctctttgatcccattttgttgacaaaaaactaaaattcagcaaccaaaatagggaggggnnnnnnn |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
3683130 |
caaccatccaatcaaaacattcactgcaaaatccctctttgatcccattttgttgacaaaaaactaaaattcagcaaccaaaata-----ggggtttttt |
3683036 |
T |
|
| Q |
201 |
nncttctcaagaatttgtatttgtgctcacacaatattttggagtggtgtagttcgattgagtaattgtagtgattggagaatgatgtattgatatggcg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3683035 |
ttcttctcaagaatttgtatttgtgctcacacaatattttggagtggtgtagttcgattgagtaattgtagtgattggagaatgatgtattgatatggcg |
3682936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 3661427 - 3661277
Alignment:
| Q |
1 |
agaaaaaatgagggtctgtgatagtatgctttagaatcaccacagcacaaaaagcaagcaatattcccaacaagatcttcactttcattgacctcttact |
100 |
Q |
| |
|
||||||||| || ||| |||||||||||||||||| ||| | ||||||||||||||||||||||||||| |||||||||||||||||||| || || || |
|
|
| T |
3661427 |
agaaaaaatttggctctctgatagtatgctttagaaccacaatagcacaaaaagcaagcaatattcccaaaaagatcttcactttcattgatcttttcct |
3661328 |
T |
|
| Q |
101 |
caaccatccaatcaaaacattcactgcaaaatccctctttgatcccatttt |
151 |
Q |
| |
|
|| |||||||| || ||||||||| | |||||||||||||||||||||| |
|
|
| T |
3661327 |
cagccatccaaacataacattcaccggtgaatccctctttgatcccatttt |
3661277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 37 - 183
Target Start/End: Complemental strand, 3666291 - 3666146
Alignment:
| Q |
37 |
tcaccacagcacaaaaagcaagcaatattcccaacaagatcttcactttcattgacctcttactcaaccatccaatcaaaacattcactgcaaaatccct |
136 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||| | | ||| |||||||| | | ||||| | |
|
|
| T |
3666291 |
tcaccacagcacaaaaagcaagcaatattcccaaaaagatcttcactttcattgacctattcctcaaccagctagacaatacattcacgggagaatcctt |
3666192 |
T |
|
| Q |
137 |
ctttgatcccattttgttgacaaaaaactaaaattcagcaaccaaaa |
183 |
Q |
| |
|
|||||||||||||||| |||| ||||| ||||| ||||||||||| |
|
|
| T |
3666191 |
ctttgatcccattttg-tgaccaaaaataaaaatctagcaaccaaaa |
3666146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 29 - 153
Target Start/End: Complemental strand, 3675765 - 3675641
Alignment:
| Q |
29 |
ctttagaatcaccacagcacaaaaagcaagcaatattcccaacaagatcttcactttcattgacctcttactcaaccatccaatcaaaacattcactgca |
128 |
Q |
| |
|
||||||| ||||| |||| |||| ||||||||||||||||| ||||| |||||||||||||| ||||| ||||||||| | |||||||||||| | |
|
|
| T |
3675765 |
ctttagagccaccaaagcagaaaatgcaagcaatattcccaaaaagattttcactttcattgatctcttcctcaaccatatagacaaaacattcacaggg |
3675666 |
T |
|
| Q |
129 |
aaatccctctttgatcccattttgt |
153 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
3675665 |
gaatccctctttgatcccattttgt |
3675641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University