View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_226 (Length: 301)

Name: NF10145A_low_226
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_226
NF10145A_low_226
[»] chr4 (3 HSPs)
chr4 (7-300)||(15684807-15685100)
chr4 (17-264)||(15693739-15693985)
chr4 (17-58)||(16652498-16652539)


Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 7 - 300
Target Start/End: Original strand, 15684807 - 15685100
Alignment:
Q  7 tttggtgttccaatatcagatcctagaatccaatttaaacataaacaataatacnnnnnnnnttcaagaaaaatataatatagatgagagaatgattatc 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||| ||||||||||    
T  15684807 tttggtgttccaatatcagatcctagaatccaatttaaacataaacaataatacaaaaaaaattcaagaaaaatataatatagatgagaaaatgattatc 15684906  T
Q  107 cattttactctcgtaatcaaacaccttgataccacttctcattctcgttgtgaggatattctgcgtagaatgcatacataagaaaaacataaaacaaata 206  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  15684907 cattttacactcgtaatcaaacaccttgataccacttctcattctcgttgtgaggatattctgcgtagaatgcatacataagaaaaacataaaacaaatt 15685006  T
Q  207 tcggctgagatgtgttaagtcacttaaagtggtacgacaatagaaatgcataaaaacaaacttaaatataagtttaatttcaaaactatctatg 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  15685007 tcggctgagatgtgttaagtcacttaaagtggtacgacaatagaaatgcataaaaacaaactgaaatataagtttaatttcaaaactatctatg 15685100  T

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Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 17 - 264
Target Start/End: Original strand, 15693739 - 15693985
Alignment:
Q  17 caatatcagatcctagaatccaatttaaacataaacaataatacnnnnnnnnttcaagaaaaatataatatagatgagagaatgattatccattttactc 116  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||        ||||||||  | ||||||||| |||   | ||||||||| ||||||||    
T  15693739 caatatcagatcctagaatccaatttaaatataaataataatacaaaaaactttcaagaactacataatataggtgaacaattgattatcctttttactc 15693838  T
Q  117 tcgtaatcaaacaccttgataccacttctcattctcgttgtgaggatattctgcgtagaatgcatacataagaaaaacataaaacaaatatcggctgaga 216  Q
    | |||||||||||||||||||  ||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||| || |  ||||  || |||||    
T  15693839 ttgtaatcaaacaccttgatagtactcctcattctcgttgtgaggatattctgcatagaatgcatagataagaaaaaca-aagaataataatgggtgaga 15693937  T
Q  217 tgtgttaagtcacttaaagtggtacgacaatagaaatgcataaaaaca 264  Q
    | | ||| ||||||||||||  ||| ||||||||||| |||| |||||    
T  15693938 tatattatgtcacttaaagttatacaacaatagaaattcatagaaaca 15693985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 16652539 - 16652498
Alignment:
Q  17 caatatcagatcctagaatccaatttaaacataaacaataat 58  Q
    |||||||||| |||||||  ||||||||||||||||||||||    
T  16652539 caatatcagagcctagaactcaatttaaacataaacaataat 16652498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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