View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_229 (Length: 297)
Name: NF10145A_low_229
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_229 |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 5e-90; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 19 - 228
Target Start/End: Complemental strand, 19176980 - 19176778
Alignment:
| Q |
19 |
acatcaatgtcttctgcgaccactcctttatttaattgatccctaagatattcctcttgtctattgtctgcattaattctgaaaattccctctgcctgca |
118 |
Q |
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| T |
19176980 |
acatcaatgtcttctgggaccactcctttatttaattgatccctaagatattcctcttgtctattgtctgcattaattctgaaaattccctctgcctgca |
19176881 |
T |
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| Q |
119 |
tattgtttaagtcaattgtaaaatatttaaccaagcaggaacatataaatattaaatagtcatttgtaaaatgaatattagacaaattgcatatagagtg |
218 |
Q |
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| T |
19176880 |
tattgtttaagtcaattgtaaaatatttaaccaagcaggaacatata-------aatagtcatttgtaaaatgaatttttgaccaattgcatatagagtg |
19176788 |
T |
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| Q |
219 |
gtgaattttg |
228 |
Q |
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|||||||||| |
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| T |
19176787 |
gtgaattttg |
19176778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 235 - 297
Target Start/End: Complemental strand, 19176719 - 19176657
Alignment:
| Q |
235 |
gtttgacacgacaccgacacatttagacattcaatcacttccattttcttaaactattgctga |
297 |
Q |
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| T |
19176719 |
gtttgacacaacaccgatacatgtagacattcaatcactttcattttcttaaactattactga |
19176657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 293
Target Start/End: Original strand, 51238019 - 51238051
Alignment:
| Q |
261 |
acattcaatcacttccattttcttaaactattg |
293 |
Q |
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| T |
51238019 |
acattcaatcacttccattttcttaaattattg |
51238051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 141; Significance: 6e-74; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 25 - 238
Target Start/End: Complemental strand, 27035865 - 27035658
Alignment:
| Q |
25 |
atgtcttctgcgaccactcctttatttaattgatccctaagatattcctcttgtctattgtctgcattaattctgaaaattccctctgcctgcatattgt |
124 |
Q |
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| T |
27035865 |
atgtcttctgggaccacgcctttatttaattcatccctatgatattcctcttgtctattgtctgcattaattctgaaaattccctctgcctgcatattgt |
27035766 |
T |
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| Q |
125 |
ttaagtcaattgtaaaatatttaaccaagcaggaacatataaatattaaatagtcatttgtaaaatga-atattagacaaattgcatatagagtggtgaa |
223 |
Q |
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| T |
27035765 |
ttaagtcagttgtaaaatatttaaccaagcaggaacatata-------aatagtcatttgtaaaatgatttttttgaccaattgcatatagagtggtgaa |
27035673 |
T |
|
| Q |
224 |
ttttgacgcaggttt |
238 |
Q |
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| T |
27035672 |
ttttgatgcaggttt |
27035658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 292
Target Start/End: Complemental strand, 27035581 - 27035547
Alignment:
| Q |
258 |
tagacattcaatcacttccattttcttaaactatt |
292 |
Q |
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| T |
27035581 |
tagacattcaatcacttccattttcttaaactatt |
27035547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 110
Target Start/End: Complemental strand, 36406716 - 36406625
Alignment:
| Q |
19 |
acatcaatgtcttctgcgaccactcctttatttaattgatccctaagatattcctcttgtctattgtctgcattaattctgaaaattccctc |
110 |
Q |
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| T |
36406716 |
acatcaatgtcttcaggaaccaatcccatgttcaattgattcctaacatgttcctcttgactattatctgcattaattctgaaaatcccctc |
36406625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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