View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_232 (Length: 295)

Name: NF10145A_low_232
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_232
NF10145A_low_232
[»] chr8 (1 HSPs)
chr8 (8-295)||(10551368-10551655)


Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 8 - 295
Target Start/End: Original strand, 10551368 - 10551655
Alignment:
Q  8 ggctggtgagaaagactaactatgctatattgtcttccttgaggttaaaatgtgccggcatgttctttggttttgttttgagaaatttttctttatggaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||    
T  10551368 ggctggtgagaaagactaactatgctatattgtcttccttgaggttaaaatgtgccgacatgttctttggttttgtttttagaaagttttctttatggaa 10551467  T
Q  108 gtataacctaacacgtaagggaccataggagctgttgtcactcaaccttcctaatttgattctactactaaaccatccatcacaacaaagccttttatcc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10551468 gtataacctaacacgtaagggaccataggagctgttgtcactcaaccttcctaatttgattctactactaaaccatccatcacaacaaagccttttatcc 10551567  T
Q  208 ctccacacaatgtgttttgcatttttatgtttttagaggtggtggtattctaaatggtggttgtgggttgttgatgtatgtgaaatga 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  10551568 ctccacacaatgtgttttgcatttttatgtttttagaggtggtggtattctaaatggtggttgtgggttgttgatgtctgtgaaatga 10551655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University