View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_237 (Length: 294)

Name: NF10145A_low_237
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_237
NF10145A_low_237
[»] chr8 (1 HSPs)
chr8 (8-294)||(31540117-31540403)


Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 8 - 294
Target Start/End: Original strand, 31540117 - 31540403
Alignment:
Q  8 aaacagagaagcaaggaacaataattagtgtagttacaatttctaaaagaaacctaatggaagacactgactaaacttaccatttataaaaacagcaaga 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  31540117 aaacagagaagcaaggaacaataattagtgtagttacaatttctaaaagaaacctaatggaagacgctgactagacttaccatttataaaaacagcaaga 31540216  T
Q  108 ggtggatgctccatcaaataagagggaggagttacatcttccttactttcttcaacagaatttgcacgaaagccaactgcaggtaggggaacccagcgat 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31540217 ggtggatgctccatcaaataagagggaggagttacatcttccttactttcttcaacagaatttgcacgaaagccaactgcaggtaggggaacccagcgat 31540316  T
Q  208 gtgattccaagaccaactgagaacaaatcatcaattcttaattgcaatttaaaagtaggtaacttgcagagggaataagaaaaatga 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31540317 gtgattccaagaccaactgagaacaaatcatcaattcttaattgcaatttaaaagtaggtaacttgcagagggaataagaaaaatga 31540403  T

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