View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_242 (Length: 292)

Name: NF10145A_low_242
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_242
NF10145A_low_242
[»] chr1 (4 HSPs)
chr1 (8-270)||(29467152-29467414)
chr1 (39-272)||(29452676-29452909)
chr1 (62-269)||(29423828-29424035)
chr1 (55-272)||(29442684-29442901)
[»] chr2 (10 HSPs)
chr2 (38-271)||(14550910-14551143)
chr2 (38-140)||(12005616-12005718)
chr2 (38-139)||(12018381-12018482)
chr2 (44-140)||(11986979-11987075)
chr2 (42-137)||(12012047-12012142)
chr2 (216-271)||(8572827-8572882)
chr2 (62-96)||(8579035-8579069)
chr2 (41-95)||(9365188-9365242)
chr2 (42-96)||(10336378-10336432)
chr2 (219-271)||(9292699-9292751)
[»] chr4 (1 HSPs)
chr4 (52-92)||(55718336-55718376)


Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 8 - 270
Target Start/End: Complemental strand, 29467414 - 29467152
Alignment:
Q  8 tggtgttaggtttagaaagagcaggagtttgaatagggagattaggaataatctgatgtttacggatgttaggattccagaaagcgattccgacattggt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |    
T  29467414 tggtgttaggtttagaaagagcaggagtttgaatagggagattaggaataatccgatgtttacggatgttaggattccagaaagcgattccgacattgat 29467315  T
Q  108 ggaaatgcagagaaggccgttacatgaaccgaacagagagatgaagttgttggggattttgaaaggaagattgagtttaatgcgggtggttaggttagag 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29467314 ggaaatgcagagaaggccgttacatgaaccgaacagagagatgaagttgttggggattttgaaaggaagattgagtttaatgcgggtggttaggttagag 29467215  T
Q  208 aaatcgttgatttggtagaaatcggagttgtgtcgaaggattaagaaacgattgagggaattt 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29467214 aaatcgttgatttggtagaaatcggagttgtgtcgaaggattaagaaacgattgagggaattt 29467152  T

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Target: chr1; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 39 - 272
Target Start/End: Complemental strand, 29452909 - 29452676
Alignment:
Q  39 aatagggagattaggaataatctgatgtttacggatgttaggattccagaaagcgattccgacattggtggaaatgcagagaaggccgttacatgaaccg 138  Q
    ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |    
T  29452909 aatagggagattaggaatattctgatgtttacggatgttagggttccagaaagcgattccgacattggtggtaatgaagagaaggccgttacatgaactg 29452810  T
Q  139 aacagagagatgaagttgttggggattttgaaaggaagattgagtttaatgcgggtggttaggttagagaaatcgttgatttggtagaaatcggagttgt 238  Q
    ||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  29452809 aacagagagatgttgttgttggggagtttgaaaggaagattgagtttaatgcgggtggttaggttagagaaatcgttgatttggtagaaaacagagttgt 29452710  T
Q  239 gtcgaaggattaagaaacgattgagggaattttg 272  Q
    |||||||||||||| |||||||||||||||||||    
T  29452709 gtcgaaggattaaggaacgattgagggaattttg 29452676  T

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Target: chr1; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 62 - 269
Target Start/End: Original strand, 29423828 - 29424035
Alignment:
Q  62 gatgtttacggatgttaggattccagaaagcgattccgacattggtggaaatgcagagaaggccgttacatgaaccgaacagagagatgaagttgttggg 161  Q
    ||||||||| |||| |||| ||||||||||||||| |  ||| || | | | ||||||||||||||||||||| |||| ||||||||||||||||||||     
T  29423828 gatgtttacagatggtagggttccagaaagcgatttcaccatcggagaagaggcagagaaggccgttacatgatccgaccagagagatgaagttgttgga 29423927  T
Q  162 gattttgaaaggaagattgagtttaatgcgggtggttaggttagagaaatcgttgatttggtagaaatcggagttgtgtcgaaggattaagaaacgattg 261  Q
    |  |||||||||| |||||||||||| |  ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  29423928 gcctttgaaaggaggattgagtttaacggcggtagttaggttagagaaatcgttgatttggtagaaatcagagttgtgtcgaaggattaaggaacgattg 29424027  T
Q  262 agggaatt 269  Q
    | ||||||    
T  29424028 aaggaatt 29424035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 55 - 272
Target Start/End: Complemental strand, 29442901 - 29442684
Alignment:
Q  55 ataatctgatgtttacggatgttaggattccagaaagcgattccgacattggtggaaatgcagagaaggccgttacatgaaccgaacagagagatgaagt 154  Q
    |||||| | ||||||||||||||||| |||||||||||||||||  |||||| |||||||||||||||||||||||||||||| |  ||||| |||  ||    
T  29442901 ataatccggtgtttacggatgttagggttccagaaagcgattccagcattggaggaaatgcagagaaggccgttacatgaacctagaagagacatgcggt 29442802  T
Q  155 tgttggggattttgaaaggaagattgagtttaatgcgggtggttaggttagagaaatcgttgatttggtagaaatcggagttgtgtcgaaggattaagaa 254  Q
    || ||||   | |||||||||  |||||||||| || ||||||||||||||||||||| | |||||||||||||||  |||||||||||||||||||| |    
T  29442801 tgatgggacctgtgaaaggaatgttgagtttaacgccggtggttaggttagagaaatcttcgatttggtagaaatcaaagttgtgtcgaaggattaagga 29442702  T
Q  255 acgattgagggaattttg 272  Q
    |||||||||| |||||||    
T  29442701 acgattgaggaaattttg 29442684  T

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Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 38 - 271
Target Start/End: Original strand, 14550910 - 14551143
Alignment:
Q  38 gaatagggagattaggaataatctgatgtttacggatgttaggattccagaaagcgattccgacattggtggaaatgcagagaaggccgttacatgaacc 137  Q
    |||||||||||| ||| |||||  ||||||||||||||||||| ||||| ||||| ||| || ||||||   | ||| ||||||| ||||||||||||||    
T  14550910 gaatagggagatcagggataatgcgatgtttacggatgttagggttccataaagcaatttcgccattggaaaagatgtagagaagaccgttacatgaacc 14551009  T
Q  138 gaacagagagatgaagttgttggggattttgaaaggaagattgagtttaatgcgggtggttaggttagagaaatcgttgatttggtagaaatcggagttg 237  Q
    || |||||||||||||||||||  |  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||    
T  14551010 gagcagagagatgaagttgttgaagccttcgaaaggaagattgagtttaatgcgggtggttaggttagagaaatcgttgatttggtagagattggacttg 14551109  T
Q  238 tgtcgaaggattaagaaacgattgagggaatttt 271  Q
    ||||||||||||||| ||| ||||||||||||||    
T  14551110 tgtcgaaggattaaggaacaattgagggaatttt 14551143  T

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Target: chr2; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 38 - 140
Target Start/End: Complemental strand, 12005718 - 12005616
Alignment:
Q  38 gaatagggagattaggaataatctgatgtttacggatgttaggattccagaaagcgattccgacattggtggaaatgcagagaaggccgttacatgaacc 137  Q
    |||||||||||||||| |||||| ||||||||||||||||||| |||||||||| |||| || | |||| |||||||||||| |||||||||||||||||    
T  12005718 gaatagggagattagggataatccgatgtttacggatgttagggttccagaaagtgatttcggctttggaggaaatgcagaggaggccgttacatgaacc 12005619  T
Q  138 gaa 140  Q
    |||    
T  12005618 gaa 12005616  T

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Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 38 - 139
Target Start/End: Complemental strand, 12018482 - 12018381
Alignment:
Q  38 gaatagggagattaggaataatctgatgtttacggatgttaggattccagaaagcgattccgacattggtggaaatgcagagaaggccgttacatgaacc 137  Q
    |||||||||||| ||| |||||| ||||||||||||||| ||| ||||||||||||||| ||   |||| |||||||||||| |||||||||||||||||    
T  12018482 gaatagggagatgagggataatccgatgtttacggatgtaagggttccagaaagcgatttcgttgttggaggaaatgcagaggaggccgttacatgaacc 12018383  T
Q  138 ga 139  Q
    ||    
T  12018382 ga 12018381  T

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Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 44 - 140
Target Start/End: Complemental strand, 11987075 - 11986979
Alignment:
Q  44 ggagattaggaataatctgatgtttacggatgttaggattccagaaagcgattccgacattggtggaaatgcagagaaggccgttacatgaaccgaa 140  Q
    |||||| ||| |||||| ||||||||||| ||||||| ||||||||||||||| ||   |||| |||||||||||| ||||||||||||||||||||    
T  11987075 ggagatgagggataatccgatgtttacgggtgttagggttccagaaagcgatttcgttgttggaggaaatgcagaggaggccgttacatgaaccgaa 11986979  T

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Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 42 - 137
Target Start/End: Complemental strand, 12012142 - 12012047
Alignment:
Q  42 agggagattaggaataatctgatgtttacggatgttaggattccagaaagcgattccgacattggtggaaatgcagagaaggccgttacatgaacc 137  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||| ||| || ||   || | |||||||||||  |||||||||||||||||    
T  12012142 agggagattagggataatctgatgtttacggatgttagggttccagaacgcggtttcggtgtttgaggaaatgcagatgaggccgttacatgaacc 12012047  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 271
Target Start/End: Complemental strand, 8572882 - 8572827
Alignment:
Q  216 gatttggtagaaatcggagttgtgtcgaaggattaagaaacgattgagggaatttt 271  Q
    ||||||||||| |||| ||||| |||||| ||||||| ||||||||||||||||||    
T  8572882 gatttggtagatatcgtagttgcgtcgaatgattaaggaacgattgagggaatttt 8572827  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 96
Target Start/End: Complemental strand, 8579069 - 8579035
Alignment:
Q  62 gatgtttacggatgttaggattccagaaagcgatt 96  Q
    ||||||||||||||||||| |||||||||||||||    
T  8579069 gatgtttacggatgttagggttccagaaagcgatt 8579035  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 9365188 - 9365242
Alignment:
Q  41 tagggagattaggaataatctgatgtttacggatgttaggattccagaaagcgat 95  Q
    |||| |||| ||| || ||| ||||||||||||||||||| ||||||||||||||    
T  9365188 taggaagataagggatgatccgatgtttacggatgttagggttccagaaagcgat 9365242  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 96
Target Start/End: Original strand, 10336378 - 10336432
Alignment:
Q  42 agggagattaggaataatctgatgtttacggatgttaggattccagaaagcgatt 96  Q
    |||||||| ||| |||||| |||||||||||||| ||||||| ||||| ||||||    
T  10336378 agggagataagggataatccgatgtttacggatggtaggattacagaatgcgatt 10336432  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 271
Target Start/End: Original strand, 9292699 - 9292751
Alignment:
Q  219 ttggtagaaatcggagttgtgtcgaaggattaagaaacgattgagggaatttt 271  Q
    |||||||| |||| | |||||||||||||||||| | || |||||||||||||    
T  9292699 ttggtagagatcgaatttgtgtcgaaggattaaggatcggttgagggaatttt 9292751  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 92
Target Start/End: Original strand, 55718336 - 55718376
Alignment:
Q  52 ggaataatctgatgtttacggatgttaggattccagaaagc 92  Q
    ||||||||| |||||||||||||  ||||||||||||||||    
T  55718336 ggaataatccgatgtttacggatcgtaggattccagaaagc 55718376  T

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