View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_244 (Length: 291)

Name: NF10145A_low_244
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_244
NF10145A_low_244
[»] chr1 (7 HSPs)
chr1 (92-269)||(5193600-5193777)
chr1 (92-269)||(43297797-43297962)
chr1 (94-222)||(31325500-31325626)
chr1 (119-225)||(50451366-50451472)
chr1 (95-174)||(50237114-50237193)
chr1 (95-185)||(1524478-1524568)
chr1 (125-208)||(20284337-20284420)
[»] chr3 (4 HSPs)
chr3 (95-222)||(38647731-38647858)
chr3 (95-222)||(23423972-23424099)
chr3 (92-141)||(11890292-11890341)
chr3 (97-185)||(24730890-24730978)
[»] chr2 (4 HSPs)
chr2 (95-185)||(572700-572790)
chr2 (101-192)||(16321950-16322041)
chr2 (187-267)||(570427-570507)
chr2 (101-141)||(42403772-42403812)
[»] chr7 (1 HSPs)
chr7 (98-213)||(23208421-23208536)
[»] chr6 (2 HSPs)
chr6 (95-222)||(24894388-24894515)
chr6 (94-216)||(35232966-35233088)
[»] chr8 (3 HSPs)
chr8 (94-183)||(26972965-26973054)
chr8 (125-208)||(23133161-23133244)
chr8 (94-183)||(14759420-14759509)
[»] chr4 (2 HSPs)
chr4 (94-208)||(54477956-54478070)
chr4 (112-225)||(3881183-3881296)
[»] scaffold0214 (1 HSPs)
scaffold0214 (92-177)||(8483-8568)
[»] chr5 (1 HSPs)
chr5 (94-147)||(23621169-23621222)


Alignment Details
Target: chr1 (Bit Score: 158; Significance: 4e-84; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 92 - 269
Target Start/End: Original strand, 5193600 - 5193777
Alignment:
Q  92 acatcatctccaactatgtaccaatattgtttaaagaagatgcaatggaagtcatcggggtcgggtgctttgtatggtttcatggaattaagggaagcaa 191  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  5193600 acatcatctccaactatgtgccaatattgtttaaagaagatgcaatggaagtcatcggggtcgggtgctttgtatggtttcatggaattaagggcagcaa 5193699  T
Q  192 acacttcattcttggtggtaggtttagtgagggaaagtttttctatctcatcaatggtgggtggtgcgccttcatgga 269  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||    
T  5193700 acacttcattcttggtggtaggtttagtgaggaaaagtttttctatgtcatcaatggtgggtggtgtgccttcatgga 5193777  T

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Target: chr1; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 92 - 269
Target Start/End: Complemental strand, 43297962 - 43297797
Alignment:
Q  92 acatcatctccaactatgtaccaatattgtttaaagaagatgcaatggaagtcatcggggtcgggtgctttgtatggtttcatggaattaagggaagcaa 191  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||||||| |||| ||||||||||||||||| ||||||||||| |||||||  | ||    
T  43297962 acatcatctccaactatgtgccaatattgtttgaagaagatgcaatggaagccatcagggtcgggtgctttgtagggtttcatggagttaagggcggtaa 43297863  T
Q  192 acacttcattcttggtggtaggtttagtgagggaaagtttttctatctcatcaatggtgggtggtgcgccttcatgga 269  Q
    |||| |||||            ||| |||||||||||||||| ||| ||||||||||||| ||||||||||| |||||    
T  43297862 acacatcatt------------tttggtgagggaaagtttttgtatgtcatcaatggtggctggtgcgcctttatgga 43297797  T

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Target: chr1; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 94 - 222
Target Start/End: Original strand, 31325500 - 31325626
Alignment:
Q  94 atcatctccaactatgtaccaatattgtttaaagaagatgcaatggaagtcatcggggtcgggtgctttgtatggtttcatggaattaagggaagcaaac 193  Q
    ||||||||||||||||  |||||||||||| |||||||| ||||||||  |||| | ||| ||||||||||| ||||||||||| ||||||| |||| |     
T  31325500 atcatctccaactatg--ccaatattgtttgaagaagatacaatggaaaccatctgagtcaggtgctttgtaaggtttcatggagttaagggcagcataa 31325597  T
Q  194 acttcattcttggtggtaggtttagtgag 222  Q
    |||||||| |||||| |||| || |||||    
T  31325598 acttcatttttggtgataggcttggtgag 31325626  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 119 - 225
Target Start/End: Complemental strand, 50451472 - 50451366
Alignment:
Q  119 tgtttaaagaagatgcaatggaagtcatcggggtcgggtgctttgtatggtttcatggaattaagggaagcaaacacttcattcttggtggtaggtttag 218  Q
    ||||| |||||||||||||||||  |||| ||| |||| ||||| || ||||||||||| || || | |||||||||||| ||||| ||| | |||| ||    
T  50451472 tgtttgaagaagatgcaatggaaaccatccgggccgggagctttataaggtttcatggagtttagtgcagcaaacacttcgttcttagtgatgggttcag 50451373  T
Q  219 tgaggga 225  Q
    |||||||    
T  50451372 tgaggga 50451366  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 95 - 174
Target Start/End: Original strand, 50237114 - 50237193
Alignment:
Q  95 tcatctccaactatgtaccaatattgtttaaagaagatgcaatggaagtcatcggggtcgggtgctttgtatggtttcat 174  Q
    ||||| ||||| |||| |||||||||||| ||||| |||||||||||| |||| ||  | ||||||||||| ||||||||    
T  50237114 tcatcaccaacaatgtgccaatattgtttgaagaaaatgcaatggaagccatctggtccaggtgctttgtaaggtttcat 50237193  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 185
Target Start/End: Complemental strand, 1524568 - 1524478
Alignment:
Q  95 tcatctccaactatgtaccaatattgtttaaagaagatgcaatggaagtcatcggggtcgggtgctttgtatggtttcatggaattaaggg 185  Q
    |||||||||||||| | ||| ||||  || ||||||||||| || ||  |||| ||||||||||||||||| ||||| ||||| |||||||    
T  1524568 tcatctccaactatatgccagtatttcttgaagaagatgcattgaaaaccatcagggtcgggtgctttgtaaggttttatggagttaaggg 1524478  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 125 - 208
Target Start/End: Complemental strand, 20284420 - 20284337
Alignment:
Q  125 aagaagatgcaatggaagtcatcggggtcgggtgctttgtatggtttcatggaattaagggaagcaaacacttcattcttggtg 208  Q
    |||||||||||||||||  |||| ||  | || |||||||| ||||||||||| ||||||| |||| | |||||||| ||||||    
T  20284420 aagaagatgcaatggaaaccatccggaccaggggctttgtagggtttcatggagttaagggcagcataaacttcatttttggtg 20284337  T

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Target: chr3 (Bit Score: 64; Significance: 5e-28; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 95 - 222
Target Start/End: Original strand, 38647731 - 38647858
Alignment:
Q  95 tcatctccaactatgtaccaatattgtttaaagaagatgcaatggaagtcatcggggtcgggtgctttgtatggtttcatggaattaagggaagcaaaca 194  Q
    |||||||| ||||||| |||||||||||| |||||||| ||||||||  |||| ||| ||||||||||||| ||||||||||| ||||| | ||||||||    
T  38647731 tcatctccgactatgtgccaatattgtttgaagaagatacaatggaaaccatctgggccgggtgctttgtaaggtttcatggagttaagtgcagcaaaca 38647830  T
Q  195 cttcattcttggtggtaggtttagtgag 222  Q
    | ||||| |||||| ||||||| |||||    
T  38647831 cctcatttttggtgataggtttggtgag 38647858  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 95 - 222
Target Start/End: Complemental strand, 23424099 - 23423972
Alignment:
Q  95 tcatctccaactatgtaccaatattgtttaaagaagatgcaatggaagtcatcggggtcgggtgctttgtatggtttcatggaattaagggaagcaaaca 194  Q
    |||||||||||||| | |||||||||||| || ||||| ||||||||  |||| | | | ||||||||||||| ||||||||| || ||||   |||| |    
T  23424099 tcatctccaactatatgccaatattgtttgaaaaagatacaatggaatccatccgtgccaggtgctttgtatgttttcatggagttgagggctacaaaaa 23424000  T
Q  195 cttcattcttggtggtaggtttagtgag 222  Q
    ||||||| |||||| |||| || |||||    
T  23423999 cttcatttttggtgataggcttggtgag 23423972  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 141
Target Start/End: Original strand, 11890292 - 11890341
Alignment:
Q  92 acatcatctccaactatgtaccaatattgtttaaagaagatgcaatggaa 141  Q
    ||||||||||| || |||| ||||||||| |||||||| |||||||||||    
T  11890292 acatcatctccgacaatgtgccaatattgcttaaagaaaatgcaatggaa 11890341  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 185
Target Start/End: Complemental strand, 24730978 - 24730890
Alignment:
Q  97 atctccaactatgtaccaatattgtttaaagaagatgcaatggaagtcatcggggtcgggtgctttgtatggtttcatggaattaaggg 185  Q
    ||||||||| |||| ||||||||||||||| || ||||| |||||| |||  ||  | || |||||||| |||||||||  ||||||||    
T  24730978 atctccaacaatgtgccaatattgtttaaaaaatatgcattggaagccatatggacccggggctttgtaaggtttcatgctattaaggg 24730890  T

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Target: chr2 (Bit Score: 59; Significance: 5e-25; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 95 - 185
Target Start/End: Complemental strand, 572790 - 572700
Alignment:
Q  95 tcatctccaactatgtaccaatattgtttaaagaagatgcaatggaagtcatcggggtcgggtgctttgtatggtttcatggaattaaggg 185  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||| |||| ||  ||||||||||||| ||||||||||| |||||||    
T  572790 tcatctccaactatgtgccaatattgtttgaagaagatgcaatggaagccatctggcccgggtgctttgtagggtttcatggagttaaggg 572700  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 192
Target Start/End: Complemental strand, 16322041 - 16321950
Alignment:
Q  101 ccaactatgtaccaatattgtttaaagaagatgcaatggaagtcatcggggtcgggtgctttgtatggtttcatggaattaagggaagcaaa 192  Q
    ||||| |||| ||| |||||||||||||| |||||||| ||| |||||||  | ||||||||||| ||||||||||| || |||| ||||||    
T  16322041 ccaacaatgtgccagtattgtttaaagaaaatgcaatgaaagccatcgggaccaggtgctttgtagggtttcatggagttgagggcagcaaa 16321950  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 267
Target Start/End: Complemental strand, 570507 - 570427
Alignment:
Q  187 agcaaacacttcattcttggtggtaggtttagtgagggaaagtttttctatctcatcaatggtgggtggtgcgccttcatg 267  Q
    ||||||||||||||| || ||| || |||| |||||||||||| | ||  | |||||||| ||||| || |||||||||||    
T  570507 agcaaacacttcatttttagtgataagtttggtgagggaaagtatgtcagtgtcatcaattgtgggaggcgcgccttcatg 570427  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 141
Target Start/End: Original strand, 42403772 - 42403812
Alignment:
Q  101 ccaactatgtaccaatattgtttaaagaagatgcaatggaa 141  Q
    ||||| |||| |||||||||||| |||||||||||||||||    
T  42403772 ccaacaatgtgccaatattgtttgaagaagatgcaatggaa 42403812  T

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Target: chr7 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 98 - 213
Target Start/End: Original strand, 23208421 - 23208536
Alignment:
Q  98 tctccaactatgtaccaatattgtttaaagaagatgcaatggaagtcatcggggtcgggtgctttgtatggtttcatggaattaagggaagcaaacactt 197  Q
    ||||||||||| | |||||||||||| |||||||| ||||||||| | || ||| | || ||||||||||||||||||||||| |||| | |||| ||||    
T  23208421 tctccaactatatgccaatattgtttgaagaagatacaatggaagccgtccgggccaggggctttgtatggtttcatggaattgagggcaacaaaaactt 23208520  T
Q  198 cattcttggtggtagg 213  Q
    |||| |||||| ||||    
T  23208521 catttttggtgatagg 23208536  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 95 - 222
Target Start/End: Original strand, 24894388 - 24894515
Alignment:
Q  95 tcatctccaactatgtaccaatattgtttaaagaagatgcaatggaagtcatcggggtcgggtgctttgtatggtttcatggaattaagggaagcaaaca 194  Q
    |||||||||||||| | |||||||||||| || ||||| ||||||||  |||| | | | || |||||||||||||||||||| || ||||   |||| |    
T  24894388 tcatctccaactatatgccaatattgtttgaaaaagatacaatggaatccatccgagccaggggctttgtatggtttcatggagttgagggcgacaaaaa 24894487  T
Q  195 cttcattcttggtggtaggtttagtgag 222  Q
    ||||||| |||||| |||| || |||||    
T  24894488 cttcatttttggtgataggcttggtgag 24894515  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 216
Target Start/End: Complemental strand, 35233088 - 35232966
Alignment:
Q  94 atcatctccaactatgtaccaatattgtttaaagaagatgcaatggaagtcatcggggtcgggtgctttgtatggtttcatggaattaagggaagcaaac 193  Q
    |||||||||||  || | ||||||||| || ||||| |||||||||||  |||| ||  | || |||||||| ||||||||||| || |||| ||||||     
T  35233088 atcatctccaataatatgccaatattgcttgaagaatatgcaatggaaaccatctggtcctggagctttgtagggtttcatggagtttagggcagcaaag 35232989  T
Q  194 acttcattcttggtggtaggttt 216  Q
    |||||||| || ||| |||||||    
T  35232988 acttcatttttagtgataggttt 35232966  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 183
Target Start/End: Complemental strand, 26973054 - 26972965
Alignment:
Q  94 atcatctccaactatgtaccaatattgtttaaagaagatgcaatggaagtcatcggggtcgggtgctttgtatggtttcatggaattaag 183  Q
    ||||||||||||||| | ||| ||||||||||| |||||||| || ||| |||||||| | || |||||||| || ||||| ||||||||    
T  26973054 atcatctccaactatatgccagtattgtttaaaaaagatgcagtgaaagccatcggggccaggggctttgtagggcttcatagaattaag 26972965  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 125 - 208
Target Start/End: Original strand, 23133161 - 23133244
Alignment:
Q  125 aagaagatgcaatggaagtcatcggggtcgggtgctttgtatggtttcatggaattaagggaagcaaacacttcattcttggtg 208  Q
    |||||||||||||||||  |||| ||  | || |||||||| ||||||||||| ||||||| |||| | |||||||| ||||||    
T  23133161 aagaagatgcaatggaaaccatccggaccaggggctttgtagggtttcatggagttaagggcagcataaacttcatttttggtg 23133244  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 183
Target Start/End: Complemental strand, 14759509 - 14759420
Alignment:
Q  94 atcatctccaactatgtaccaatattgtttaaagaagatgcaatggaagtcatcggggtcgggtgctttgtatggtttcatggaattaag 183  Q
    ||||||||||||||| | |||  |||||||||| |||||| | || ||| |||||||| | || |||||||| || ||||| ||||||||    
T  14759509 atcatctccaactatatgccaggattgtttaaaaaagatgtagtgaaagccatcggggccaggggctttgtagggcttcatagaattaag 14759420  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 208
Target Start/End: Original strand, 54477956 - 54478070
Alignment:
Q  94 atcatctccaactatgtaccaatattgtttaaagaagatgcaatggaagtcatcggggtcgggtgctttgtatggtttcatggaattaagggaagcaaac 193  Q
    |||||| ||||| |||| |||||||||||| ||||||||| | |||||| |||| ||| | |  ||||| || || ||||| || |||||||||||||||    
T  54477956 atcatcaccaacaatgtgccaatattgtttgaagaagatgtagtggaagccatctgggcctgaggctttatagggcttcatagagttaagggaagcaaac 54478055  T
Q  194 acttcattcttggtg 208  Q
    || || || ||||||    
T  54478056 acctcttttttggtg 54478070  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 225
Target Start/End: Complemental strand, 3881296 - 3881183
Alignment:
Q  112 ccaatattgtttaaagaagatgcaatggaagtcatcggggtcgggtgctttgtatggtttcatggaattaagggaagcaaacacttcattcttggtggta 211  Q
    |||||| ||||| |||||||||||||||||  |||| ||| | || ||||| || ||||||||||| ||  ||| |||||| ||||| ||||| ||| |     
T  3881296 ccaatactgtttgaagaagatgcaatggaaaccatccgggccaggagctttataaggtttcatggagttttgggcagcaaaaacttctttcttagtgatg 3881197  T
Q  212 ggtttagtgaggga 225  Q
    ||||  ||||||||    
T  3881196 ggttcggtgaggga 3881183  T

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Target: scaffold0214 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 177
Target Start/End: Complemental strand, 8568 - 8483
Alignment:
Q  92 acatcatctccaactatgtaccaatattgtttaaagaagatgcaatggaagtcatcggggtcgggtgctttgtatggtttcatgga 177  Q
    |||||||||||||| |||| |||| ||||||||||||| || ||||| ||  |||| ||| | || |||||||| || ||||||||    
T  8568 acatcatctccaacaatgtgccaaaattgtttaaagaaaatacaatgaaaaccatcagggccaggggctttgtagggcttcatgga 8483  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 147
Target Start/End: Original strand, 23621169 - 23621222
Alignment:
Q  94 atcatctccaactatgtaccaatattgtttaaagaagatgcaatggaagtcatc 147  Q
    |||||| ||||| || | ||||||||||||||| ||||||||||||||| ||||    
T  23621169 atcatcaccaacaatatgccaatattgtttaaaaaagatgcaatggaagccatc 23621222  T

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