View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_246 (Length: 291)

Name: NF10145A_low_246
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_246
NF10145A_low_246
[»] chr3 (1 HSPs)
chr3 (14-291)||(44853287-44853553)


Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 14 - 291
Target Start/End: Complemental strand, 44853553 - 44853287
Alignment:
Q  14 agacgagatcgaatatggaccaaaatgatttgttataaacgcgttaaaataaaatcgacaggcctgctaaatccaatatacgcaacccggcccattgtaa 113  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  44853553 agacgagatcgaatatggaccaaaataattttttataaacgcgttaaaataaaatcgacaggcctgctaaatccaatatacgcaacccgacccattgtaa 44853454  T
Q  114 actacatgattcgattctaaccctagaaaccacggcaccaacggcgcggataaatatcattttcctttttatcttttaccgnnnnnnntaatgataaaat 213  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||        ||||||||||||    
T  44853453 actacatgactcgattctaaccctagaaaccacggcaccaacggcgcg-----------ttttcctttttatcttttacccaaaaaaataatgataaaat 44853365  T
Q  214 accattttctttttcatcttttaccacaaaaatcgtactataggacaaaatattaaatcagatttgaacaaaatttga 291  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44853364 accattttctttttcatcttttaccataaaaatcgtactataggacaaaatattaaatcagatttgaacaaaatttga 44853287  T

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