View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_247 (Length: 291)
Name: NF10145A_low_247
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_247 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 21706217 - 21705928
Alignment:
| Q |
1 |
aaaatagaacatacttcattttgactatgatcagagcatatcatcacaaagatccatgacaaagccaatttgggacaatccatcacaccaagacccctta |
100 |
Q |
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| T |
21706217 |
aaaatagaacatacttcattttgactatgatcagagcgtatcatcacaaagatccatgacaaagccaatttgggacaatcgttcacaacaagagccttta |
21706118 |
T |
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| Q |
101 |
aagagtgagatggccacttggcatgacagtattcgggacatatcccaatgaaattgtcaagtaaaaggagattgagtactttcagttgaggaagcatgat |
200 |
Q |
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| T |
21706117 |
aagagtgagatggccactttgcaagacagtattcgggacatatcccaat-aaattgtgaaggaattcgagattgagtactttcagttgaggaagcatgat |
21706019 |
T |
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| Q |
201 |
gtggttgtggtatttgtgagaagaatgatgttcatgatcacattaaccaaatatatatttcagctcaggaacgcgtcttatatttatcgat |
291 |
Q |
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| T |
21706018 |
gtggttgtggtatttgtgagaagaatgatgttcatgatcacattcaccaaatatatatttcagctcaggaacgcctattatatatatcgat |
21705928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 51 - 267
Target Start/End: Original strand, 21713363 - 21713579
Alignment:
| Q |
51 |
gatccatgacaaagccaatttgggacaatccatcacaccaagaccccttaaagagtgagatggccacttggcatgacagtattcgggacatatcccaatg |
150 |
Q |
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| T |
21713363 |
gatccacgacatatccaatttgggacaatcctccacaacaagatccctcaaagagtgagatggccacttcgcatgacagtattcaggacacatcccaatg |
21713462 |
T |
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| Q |
151 |
aaattgtcaagtaaaaggagattgagtactttcagttgaggaagcatgatgtggttgtggtatttgtgagaagaatgatgttcatgatcacattaaccaa |
250 |
Q |
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| T |
21713463 |
agattgtcaagagaactgagtttgagaacttccagttgagaaagcatggtgtggttcaggtattggtgagatgaatgatgttcatgatcacattcaccaa |
21713562 |
T |
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| Q |
251 |
atatatatttcagctca |
267 |
Q |
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| T |
21713563 |
atatatatttcagctca |
21713579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 21709144 - 21709088
Alignment:
| Q |
21 |
ttgactatgatcagagcatatcatcacaaagatccatgacaaagccaatttgggaca |
77 |
Q |
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| T |
21709144 |
ttgactatgatcagagcgtatcatcacagcgatccataacatagccaactttggaca |
21709088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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