View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_248 (Length: 290)
Name: NF10145A_low_248
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_248 |
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| [»] chr7 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 18 - 290
Target Start/End: Original strand, 3036378 - 3036650
Alignment:
| Q |
18 |
gacatcacatggtgaaaagatggatcaaacactggttgttgagaagattctgagatctttaacaagtaagttcaattatgtggtgtgctctattgaagaa |
117 |
Q |
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| T |
3036378 |
gacatcacatggtgaaaagatggatcaaacactggttgttgagaagattctgagatctttaacaagtaagttcaattatgtggtgtgctctattgaagaa |
3036477 |
T |
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| Q |
118 |
tctaatgatgtgactgcattcttcatcgatgaacttcagagtagcttacttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagc |
217 |
Q |
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| T |
3036478 |
tctaatgatgtgactgcactcttcatcgatgaacttcagagtagcttacttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagc |
3036577 |
T |
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| Q |
218 |
aagctttgaaggtttcgaatggaggaagtggatctatgggatttggtaaaggaagagggcgttcaggtgctag |
290 |
Q |
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| T |
3036578 |
aagctttgaaggtttcgaatggaggaagaggatctatgggatatggtagaggaagagggcattcaggtgctag |
3036650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 27 - 282
Target Start/End: Original strand, 20528758 - 20529013
Alignment:
| Q |
27 |
tggtgaaaagatggatcaaacactggttgttgagaagattctgagatctttaacaagtaagttcaattatgtggtgtgctctattgaagaatctaatgat |
126 |
Q |
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| T |
20528758 |
tggtgaaaagatggatcaaactctgcttgttgaaaagatcttgagatctttaacaagcaagttcaattatgtggtgtgatctattgaagaatccaatgat |
20528857 |
T |
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| Q |
127 |
gtgactgcattcttcatcgatgaacttcagagtagcttacttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagcaagctttga |
226 |
Q |
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| T |
20528858 |
gtgacaacactttccattaatgaattacatagtagtttacttgttcaagaacaacgcatgaaatctcaaaaccaagaaactgatactgagcaagctttga |
20528957 |
T |
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| Q |
227 |
aggtttcgaatggaggaagtggatctatgggatttggtaaaggaagagggcgttca |
282 |
Q |
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| T |
20528958 |
aggtttctaatggtggaagaggatctgtgggatatgggagaggaagagggcgttca |
20529013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 18 - 286
Target Start/End: Original strand, 16863125 - 16863393
Alignment:
| Q |
18 |
gacatcacatggtgaaaagatggatcaaacactggttgttgagaagattctgagatctttaacaagtaagttcaattatgtggtgtgctctattgaagaa |
117 |
Q |
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|||| |||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||| || ||||| ||| ||||||| ||| | ||| |
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| T |
16863125 |
gacaacacatggtgagaagatggatcaaacacttgttgttgaaaagattctgagatctttaacaagtaaatttaattacgtgctgtgctcaattcatgaa |
16863224 |
T |
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| Q |
118 |
tctaatgatgtgactgcattcttcatcgatgaacttcagagtagcttacttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagc |
217 |
Q |
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| T |
16863225 |
tcaaatgatgtaactacactctcaattaatgaacttcatagcagtttacttgttcaagaacaacgcatgaaaactcaaaatcaagaaattgatattgaac |
16863324 |
T |
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| Q |
218 |
aagctttgaaggtttcgaatggaggaagtggatctatgggatttggtaaaggaagagggcgttcaggtg |
286 |
Q |
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| T |
16863325 |
aagctttgaaggcatctaatggtggaagaggatctgtaggatatggtagaggaagagggcgttcaggtg |
16863393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 109; Significance: 7e-55; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 18 - 290
Target Start/End: Complemental strand, 40613245 - 40612973
Alignment:
| Q |
18 |
gacatcacatggtgaaaagatggatcaaacactggttgttgagaagattctgagatctttaacaagtaagttcaattatgtggtgtgctctattgaagaa |
117 |
Q |
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|||| |||||||||| |||||||||||||| ||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||| || ||||||||| |
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| T |
40613245 |
gacaacacatggtgagaagatggatcaaacgctggttgttgaaaagattttgagatctttaacaagtaaattcaattatgtggtgtgttccattgaagaa |
40613146 |
T |
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| Q |
118 |
tctaatgatgtgactgcattcttcatcgatgaacttcagagtagcttacttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagc |
217 |
Q |
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| T |
40613145 |
tcaaacgacgtcactacactatcaattgatgagttgcagagtagtttacttgttcaagaacaacacatgaaatctcaaaatcaagacattgatgttgaac |
40613046 |
T |
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| Q |
218 |
aagctttgaaggtttcgaatggaggaagtggatctatgggatttggtaaaggaagagggcgttcaggtgctag |
290 |
Q |
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| T |
40613045 |
aagctttgaaggtttccaatggtgaaagaggtttcgtggggtatggtagaggaagaggacgttcaggtgctag |
40612973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 7e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 23 - 230
Target Start/End: Original strand, 20542082 - 20542289
Alignment:
| Q |
23 |
cacatggtgaaaagatggatcaaacactggttgttgagaagattctgagatctttaacaagtaagttcaattatgtggtgtgctctattgaagaatctaa |
122 |
Q |
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| T |
20542082 |
cacatggtgagaagatggatcaaacgctggttgttgaaaagattctgagatctttaacaagtaaattcaattatgtggtgtgttccattgaagaatcaaa |
20542181 |
T |
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| Q |
123 |
tgatgtgactgcattcttcatcgatgaacttcagagtagcttacttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagcaagct |
222 |
Q |
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||| || ||| | | | || ||||| | |||||||| |||||||||||||||| |||||| ||||||||||||||||| ||||| |||| |||||| |
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| T |
20542182 |
tgacgtcactacgctatcaattgatgagttgcagagtagtttacttgttcaagaacaacgcatgaaatctcagaatcaagactttgatgttgaacaagct |
20542281 |
T |
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| Q |
223 |
ttgaaggt |
230 |
Q |
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| T |
20542282 |
ttgaaggt |
20542289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 132
Target Start/End: Complemental strand, 23940233 - 23940152
Alignment:
| Q |
50 |
tggttgttgagaagattctgagatctttaacaagtaagttcaattatgtggtgtgctctattgaagaatctaatgatgtgact |
132 |
Q |
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| T |
23940233 |
tggtggttgagaagattttaagatcatta-caagcaagttcaattgtgtggtgtgttccattgaagaatcaaatgatgtgact |
23940152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 128
Target Start/End: Complemental strand, 29945214 - 29945174
Alignment:
| Q |
88 |
ttcaattatgtggtgtgctctattgaagaatctaatgatgt |
128 |
Q |
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| T |
29945214 |
ttcaattatgttgtgtgctcaattgaagaatcaaatgatgt |
29945174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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