View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_253 (Length: 288)
Name: NF10145A_low_253
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_253 |
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Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 7 - 275
Target Start/End: Original strand, 16569398 - 16569666
Alignment:
| Q |
7 |
attaaaggccaattcatgaagaggttttcattcttttggactgttctttctttactgcttccattttcgaaagcttctgcatcacctttggattcttcgc |
106 |
Q |
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| T |
16569398 |
attaaaggccaattcatgaagaggttttcattcttttggactgttctttctttactgcttccattttctaaagcttccgcatcacctttggattcttcgc |
16569497 |
T |
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| Q |
107 |
taccattgtgattgtgaagtgtttcctgcagatagtgtaaacaactataattgatgagggaaacaaagaagactatataactagtggagacaaagcacgg |
206 |
Q |
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| T |
16569498 |
taccattgtgattgtgaagtgtttcctgcagatagtgtaaacatctataattgatgagggaaacaaagaagactttataactatttgagacaaagcacgg |
16569597 |
T |
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| Q |
207 |
ataagcgagaaaaaacacagaaattagtttacattagcggaaatagtaaacatgtacattttgacgttc |
275 |
Q |
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| T |
16569598 |
ataagcgagaaaaaacacagaaattagtttacattagcgtaaatagtaaacatgtacattttgacgttc |
16569666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 7 - 235
Target Start/End: Original strand, 16527899 - 16528127
Alignment:
| Q |
7 |
attaaaggccaattcatgaagaggttttcattcttttggactgttctttctttactgcttccattttcgaaagcttctgcatcacctttggattcttcgc |
106 |
Q |
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| T |
16527899 |
attaaaggccaattcataaagaggttttcattctttcggactgtcttttctttgttgcttccattttctaaagcttcggcgtcatctgtggactctttgt |
16527998 |
T |
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| Q |
107 |
taccattgtgattgtgaagtgtttcctgcagatagtgtaaacaactataattgatgagggaaacaaagaagactatataactagtggagacaaagcacgg |
206 |
Q |
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| T |
16527999 |
taccattgtgattgtgaagtgtttcctgcagatagtgtacacaactataattgatgagggaaacagagacgattatatgaacagtggagacaaagcacgg |
16528098 |
T |
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| Q |
207 |
ataagcgagaaaaaacacagaaattagtt |
235 |
Q |
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| T |
16528099 |
ataagatagaaaaaacacagaaattagtt |
16528127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 7 - 161
Target Start/End: Original strand, 16588097 - 16588250
Alignment:
| Q |
7 |
attaaaggccaattcatgaagaggttttcattcttttggactgttctttctttactgcttccattttcgaaagcttctgcatcacctttggattcttcgc |
106 |
Q |
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| T |
16588097 |
attaaaggccaattcaaaaagaggttttcattcttttgaactgtcttttctttgctgcttccattttctaaagcttcggcattacctttggactcttcgt |
16588196 |
T |
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| Q |
107 |
taccattgtgattgtgaagtgtttcctgcagatagtgtaaacaactataattgat |
161 |
Q |
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| T |
16588197 |
taccattgtgattgtgaagtgtttcctgcggatagt-ttaataactataattgat |
16588250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 16519471 - 16519603
Alignment:
| Q |
13 |
ggccaattcatgaagaggttttcattcttttggactgttctttcttt----ac-----tgcttccattttcgaaagcttctgcatcacctttggattctt |
103 |
Q |
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| T |
16519471 |
ggccaattcatcaagaggttttcattcttttgaactatcttttctttgtcaacctttttgcttccattttctatagcttcagcatcatctatggactcac |
16519570 |
T |
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| Q |
104 |
cgctaccattgtgattgtgaagtgtttcctgca |
136 |
Q |
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| T |
16519571 |
tgctaccattgtgcttgtgaagtgtttcctgca |
16519603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 9008958 - 9008905
Alignment:
| Q |
7 |
attaaaggccaattcatgaagaggttttcattcttttggactgttctttcttta |
60 |
Q |
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| T |
9008958 |
attaaaggccaattcctgaagagaatttcattcttttggactgtattttcttta |
9008905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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