View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_254 (Length: 288)
Name: NF10145A_low_254
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_254 |
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| [»] scaffold0391 (1 HSPs) |
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Alignment Details
Target: scaffold0391 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 20 - 288
Target Start/End: Original strand, 12802 - 13070
Alignment:
| Q |
20 |
atcacaaactacggtttccatccctctgaactgaataactctgagctacttgactctttacacaacctgaaacgaattagactggagcgaatttctgttc |
119 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12802 |
atcacaaactacggtttccatccttctgaactgaataactttgagctacttgactctttacacaacctgaaacgaattagactggagcgaatttctgttc |
12901 |
T |
|
| Q |
120 |
cttccttcggcacattgaagagtctgagaaaactatcactttacatgtgtaatacaagactggctttcgaaaagggtagcgtcctaatttcagatgcatt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12902 |
cttccttcggcacattgaagagtctgagaaaactatcactttacatgtgtaatacaagactggctttcgaaaagggtagcgtcctaatttcagatgcatt |
13001 |
T |
|
| Q |
220 |
tccatatctagaagaattgaacattgattactgcaaatatatggtgagatttcctcctggtatatgtga |
288 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
13002 |
tccaaatctagaagaattgaacattgattactgcaaagatatggtgagatttcctactggtatatgtga |
13070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 134; Significance: 9e-70; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 20 - 265
Target Start/End: Original strand, 33975839 - 33976084
Alignment:
| Q |
20 |
atcacaaactacggtttccatccctctgaactgaataactctgagctacttgactctttacacaacctgaaacgaattagactggagcgaatttctgttc |
119 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||| ||| |||||| || | |||||||| |||||| || |||| ||||| ||||||||||| || | |
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| T |
33975839 |
atcacaaactacggtttccatccttctaaactgaacaacattgagcttctcggttctttacagaacctggaaagaatcagactagagcgaatttcggtcc |
33975938 |
T |
|
| Q |
120 |
cttccttcggcacattgaagagtctgagaaaactatcactttacatgtgtaatacaagactggctttcgaaaagggtagcgtcctaatttcagatgcatt |
219 |
Q |
| |
|
||||||||||||||||||||| | ||| ||||||||| || ||||||||||| |||| ||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
33975939 |
cttccttcggcacattgaagaatttgaaaaaactatctctgtacatgtgtaacacaatactggcttttgaaaagggtagcatcctaatttcagatgcatt |
33976038 |
T |
|
| Q |
220 |
tccatatctagaagaattgaacattgattactgcaaatatatggtg |
265 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||| || ||||| |
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|
| T |
33976039 |
tccaaatctagaagaattgaacattgattactgcaaagatttggtg |
33976084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 20 - 265
Target Start/End: Original strand, 33992758 - 33993003
Alignment:
| Q |
20 |
atcacaaactacggtttccatccctctgaactgaataactctgagctacttgactctttacacaacctgaaacgaattagactggagcgaatttctgttc |
119 |
Q |
| |
|
|||||||||||| |||||||||| | ||||||||| |||| |||||| || | |||||||| |||||| || ||| ||||| |||||||||| || | |
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| T |
33992758 |
atcacaaactacagtttccatccatgtgaactgaacaactttgagcttctcggttctttacagaacctggaaaaaatcagactagagcgaattttggtcc |
33992857 |
T |
|
| Q |
120 |
cttccttcggcacattgaagagtctgagaaaactatcactttacatgtgtaatacaagactggctttcgaaaagggtagcgtcctaatttcagatgcatt |
219 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||| || ||||||||||| |||| ||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
33992858 |
cttccttcggcacattgaagaatctgaaaaaactatctctctacatgtgtaacacaatactggcttttgaaaagggtagcatcctaatttcagatgcatt |
33992957 |
T |
|
| Q |
220 |
tccatatctagaagaattgaacattgattactgcaaatatatggtg |
265 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| || ||||| |
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| T |
33992958 |
tccaaatctagaagaattgaacattgattactgcaaagatttggtg |
33993003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 20 - 288
Target Start/End: Original strand, 33960544 - 33960812
Alignment:
| Q |
20 |
atcacaaactacggtttccatccctctgaactgaataactctgagctacttgactctttacacaacctgaaacgaattagactggagcgaatttctgttc |
119 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||| ||| |||||| || | |||||||| |||||| || |||| ||||| ||||||||||| || | |
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|
| T |
33960544 |
atcacaaactacggtttccatccttctaaactgaacaacattgagcttctcggttctttacagaacctggaaagaatcagactagagcgaatttcggtcc |
33960643 |
T |
|
| Q |
120 |
cttccttcggcacattgaagagtctgagaaaactatcactttacatgtgtaatacaagactggctttcgaaaagggtagcgtcctaatttcagatgcatt |
219 |
Q |
| |
|
||||||||||||||||||||| | ||| ||||||||| || ||||||||||| |||| ||||||||| |||||||||||| ||||||||||||||||||| |
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|
| T |
33960644 |
cttccttcggcacattgaagaatttgaaaaaactatctctctacatgtgtaacacaatactggcttttgaaaagggtagcatcctaatttcagatgcatt |
33960743 |
T |
|
| Q |
220 |
tccatatctagaagaattgaacattgattactgcaaatatatggtgagatttcctcctggtatatgtga |
288 |
Q |
| |
|
| || | |||||||||||||||||||||||||||||| || ||||| |||||| ||||||| ||||| |
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|
| T |
33960744 |
tgcaaacctagaagaattgaacattgattactgcaaagatttggtggtatttccaactggtatctgtga |
33960812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 20 - 265
Target Start/End: Original strand, 33953238 - 33953483
Alignment:
| Q |
20 |
atcacaaactacggtttccatccctctgaactgaataactctgagctacttgactctttacacaacctgaaacgaattagactggagcgaatttctgttc |
119 |
Q |
| |
|
||||||||||||| ||||||||| ||| ||||||| ||| |||||| || | |||||||| |||||| || |||| ||| | ||||| |||| |||| |
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|
| T |
33953238 |
atcacaaactacgatttccatccttctaaactgaacaacattgagcttctcggttctttacagaacctggaaagaatcagattagagcggatttacgttc |
33953337 |
T |
|
| Q |
120 |
cttccttcggcacattgaagagtctgagaaaactatcactttacatgtgtaatacaagactggctttcgaaaagggtagcgtcctaatttcagatgcatt |
219 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||| || ||||||||||| |||| ||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
33953338 |
cttccttcggcacattgaagaatctgaaaaaactatctctctacatgtgtaacacaatactggcttttgaaaagggtagcatcctaatttcagatgcatt |
33953437 |
T |
|
| Q |
220 |
tccatatctagaagaattgaacattgattactgcaaatatatggtg |
265 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| || ||||| |
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| T |
33953438 |
tccaaatctagaagaattgaacattgattactgcaaagatttggtg |
33953483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 44 - 249
Target Start/End: Original strand, 33914084 - 33914289
Alignment:
| Q |
44 |
tctgaactgaataactctgagctacttgactctttacacaacctgaaacgaattagactggagcgaatttctgttccttccttcggcacattgaagagtc |
143 |
Q |
| |
|
|||| |||||| || | ||||||| || ||||||| |||||||||| |||| || || ||||| ||||||||||||||||| |||||| |||||| || |
|
|
| T |
33914084 |
tctgtactgaacaattttgagctaattagctctttatccaacctgaaaagaatcaggctagagcggatttctgttccttcctttggcacaatgaagaatc |
33914183 |
T |
|
| Q |
144 |
tgagaaaactatcactttacatgtgtaatacaagactggctttcgaaaagggtagcgtcctaatttcagatgcatttccatatctagaagaattgaacat |
243 |
Q |
| |
|
| | |||| |||| || |||||||||||||||||||| ||||| |||||||||||| |||||||||||||| ||||| || ||||||| |||| ||| |
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|
| T |
33914184 |
tcaaaaaattatccctctacatgtgtaatacaagactagcttttgaaaagggtagcatcctaatttcagatttgtttcctaatttagaagatttgagcat |
33914283 |
T |
|
| Q |
244 |
tgatta |
249 |
Q |
| |
|
|||||| |
|
|
| T |
33914284 |
tgatta |
33914289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 44 - 255
Target Start/End: Original strand, 33942801 - 33943012
Alignment:
| Q |
44 |
tctgaactgaataactctgagctacttgactctttacacaacctgaaacgaattagactggagcgaatttctgttccttccttcggcacattgaagagtc |
143 |
Q |
| |
|
||||||||||| || |||||||||| ||||||| |||||| ||| |||| || || ||| | ||||||||||||||||| ||||||||||||| || |
|
|
| T |
33942801 |
tctgaactgaacaatcttgagctacttagctctttatccaaccttaaaagaatcaggctagagaggatttctgttccttcctttggcacattgaagaatc |
33942900 |
T |
|
| Q |
144 |
tgagaaaactatcactttacatgtgtaatacaagactggctttcgaaaagggtagcgtcctaatttcagatgcatttccatatctagaagaattgaacat |
243 |
Q |
| |
|
| | |||| |||| || |||||||||||||||||||| ||||| |||||||| ||| |||||||||| || |||||| || ||||||| |||| ||| |
|
|
| T |
33942901 |
ttaaaaaattatccctctacatgtgtaatacaagactcgcttttgaaaagggcagcatcctaatttccgacttatttcctaatttagaagatttgagcat |
33943000 |
T |
|
| Q |
244 |
tgattactgcaa |
255 |
Q |
| |
|
||||| ||||| |
|
|
| T |
33943001 |
ggattattgcaa |
33943012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 199
Target Start/End: Complemental strand, 8277514 - 8277342
Alignment:
| Q |
20 |
atcacaaactacggtttccatccctctgaactgaataactctgagctacttgactctttacacaacctgaaacgaattagactggagcgaatttctgttc |
119 |
Q |
| |
|
|||||||||||| |||||||||| ||| ||||||||||| |||||| ||| |||| ||||| ||| || | ||| | ||||| ||||| |||| |
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|
| T |
8277514 |
atcacaaactacagtttccatccttctaaactgaataacattgagct-------tctctacagaacctaaaaagagtcagattagagcggatttccgttc |
8277422 |
T |
|
| Q |
120 |
cttccttcggcacattgaagagtctgagaaaactatcactttacatgtgtaatacaagactggctttcgaaaagggtagc |
199 |
Q |
| |
|
| ||| ||| ||||||||||| |||||||||| |||| | |||||||||||||||||| || |||| |||| ||||||| |
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|
| T |
8277421 |
catccctcgacacattgaagaatctgagaaaattatctgtctacatgtgtaatacaagaatgacttttgaaatgggtagc |
8277342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 201 - 265
Target Start/End: Complemental strand, 8276008 - 8275944
Alignment:
| Q |
201 |
tcctaatttcagatgcatttccatatctagaagaattgaacattgattactgcaaatatatggtg |
265 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||| || ||||| |
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|
| T |
8276008 |
tcctaatttcagatgcatttccaaatcctgaagaattgaacattgattcctgcaaagatttggtg |
8275944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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