View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_258 (Length: 287)
Name: NF10145A_low_258
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_258 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 9 - 272
Target Start/End: Complemental strand, 38447339 - 38447078
Alignment:
| Q |
9 |
tatgtatgtgactatgttgttatagtttcaatcaattgagaaaaagaaagtaaaacatgaacaaaaatacctcgcgagcgaatttagaccatttgaatcc |
108 |
Q |
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||||||||||||||||||||||||| |||||| | | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
38447339 |
tatgtatgtgactatgttgttataggttcaattgaa--aaaaaaagaaagtaaaacatgaacaaaaatacctcgcgagcgattttagaccatttgaatcc |
38447242 |
T |
|
| Q |
109 |
accatacttcttacgtaactgaaagactttattttcttcttctttactaaatggacccttttttacaccaggtcttaggttattataccatctaaaacgg |
208 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38447241 |
accaaacttcttacgtaactgaaagactttattttcttcttctttactaaatggacccttttttacaccaggtcttaggttattataccatctaaaacgg |
38447142 |
T |
|
| Q |
209 |
caacttcttccgaagtgtgcaagtcctgtgttctttgatacctcgtcccaatttctggttccat |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38447141 |
caacttcttccgaagtgtgcaagtcctgtgttctttgatacctcgtcccaatttctggttccat |
38447078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 92 - 272
Target Start/End: Complemental strand, 38180792 - 38180612
Alignment:
| Q |
92 |
ttagaccatttgaatccaccatacttcttacgtaactgaaagactttattttcttcttctttactaaatggacccttttttacaccaggtcttaggttat |
191 |
Q |
| |
|
||||||||||||||| |||||||||| || |||| ||| |||||| || |||||||| |||||||||||||||||| ||| | ||| ||||| || |
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| T |
38180792 |
ttagaccatttgaattcaccatactttatatagaactcaaaaactttagatttttcttcttcactaaatggaccctttttcacatctggttgtaggtgat |
38180693 |
T |
|
| Q |
192 |
tataccatctaaaacggcaacttcttccgaagtgtgcaagtcctgtgttctttgatacctcgtcccaatttctggttccat |
272 |
Q |
| |
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|||||||||| | ||| |||||| | ||| | || ||| || | || ||||||||||||| ||||||||||||||||| |
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|
| T |
38180692 |
tataccatcttagacgacaacttttaccgcaacgtataagccccgcattttttgatacctcgttccaatttctggttccat |
38180612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 92 - 272
Target Start/End: Original strand, 38190339 - 38190519
Alignment:
| Q |
92 |
ttagaccatttgaatccaccatacttcttacgtaactgaaagactttattttcttcttctttactaaatggacccttttttacaccaggtcttaggttat |
191 |
Q |
| |
|
||||||||||||||| |||||||||| || |||| ||| |||||| || |||||||| |||||||||||||||||| ||| | ||| ||||| || |
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| T |
38190339 |
ttagaccatttgaattcaccatactttatatagaactcaaaaactttagatttttcttcttcactaaatggaccctttttcacatctggttgtaggtgat |
38190438 |
T |
|
| Q |
192 |
tataccatctaaaacggcaacttcttccgaagtgtgcaagtcctgtgttctttgatacctcgtcccaatttctggttccat |
272 |
Q |
| |
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|||||||||| | ||| |||||| | ||| | || ||| || | || ||||||||||||| ||||||||||||||||| |
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|
| T |
38190439 |
tataccatcttagacgacaacttttaccgcaacgtataagccccgcattttttgatacctcgttccaatttctggttccat |
38190519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 92 - 272
Target Start/End: Complemental strand, 38208016 - 38207836
Alignment:
| Q |
92 |
ttagaccatttgaatccaccatacttcttacgtaactgaaagactttattttcttcttctttactaaatggacccttttttacaccaggtcttaggttat |
191 |
Q |
| |
|
||||||||||||||| |||||||||| || |||| ||| |||||| || |||||||| |||||||||||||||||| ||| | ||| ||||| || |
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| T |
38208016 |
ttagaccatttgaattcaccatactttatatagaactcaaaaactttagatttttcttcttcactaaatggaccctttttcacatctggttgtaggtgat |
38207917 |
T |
|
| Q |
192 |
tataccatctaaaacggcaacttcttccgaagtgtgcaagtcctgtgttctttgatacctcgtcccaatttctggttccat |
272 |
Q |
| |
|
|||||||||| | ||| |||||| | ||| | || ||| || | || ||||||||||||| ||||||||||||||||| |
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|
| T |
38207916 |
tataccatcttagacgacaacttttaccgcaacgtataagccccgcattttttgatacctcgttccaatttctggttccat |
38207836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 92 - 272
Target Start/End: Original strand, 38217564 - 38217744
Alignment:
| Q |
92 |
ttagaccatttgaatccaccatacttcttacgtaactgaaagactttattttcttcttctttactaaatggacccttttttacaccaggtcttaggttat |
191 |
Q |
| |
|
||||||||||||||| |||||||||| || |||| ||| |||||| || |||||||| |||||||||||||||||| ||| | ||| ||||| || |
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| T |
38217564 |
ttagaccatttgaattcaccatactttatatagaactcaaaaactttagatttttcttcttcactaaatggaccctttttcacatctggttgtaggtgat |
38217663 |
T |
|
| Q |
192 |
tataccatctaaaacggcaacttcttccgaagtgtgcaagtcctgtgttctttgatacctcgtcccaatttctggttccat |
272 |
Q |
| |
|
|||||||||| | ||| |||||| | ||| | || ||| || | || ||||||||||||| ||||||||||||||||| |
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| T |
38217664 |
tataccatcttagacgacaacttttaccgcaacgtataagccccgcattttttgatacctcgttccaatttctggttccat |
38217744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 92 - 272
Target Start/End: Complemental strand, 38456152 - 38455972
Alignment:
| Q |
92 |
ttagaccatttgaatccaccatacttcttacgtaactgaaagactttattttcttcttctttactaaatggacccttttttacaccaggtcttaggttat |
191 |
Q |
| |
|
||||||||||||||| |||||||||| || |||| ||| |||||| || |||||||| |||||||||||||||||| ||| | ||| ||||| || |
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|
| T |
38456152 |
ttagaccatttgaattcaccatactttatatagaactcaaaaactttagatttttcttcttcactaaatggaccctttttcacatctggttgtaggtgat |
38456053 |
T |
|
| Q |
192 |
tataccatctaaaacggcaacttcttccgaagtgtgcaagtcctgtgttctttgatacctcgtcccaatttctggttccat |
272 |
Q |
| |
|
|||||||||| | ||| |||||| | ||| | || ||| || | || ||||||||||||| ||||||||||||||||| |
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| T |
38456052 |
tataccatcttagacgacaacttttaccgcaacgtataagccccgcattttttgatacctcgttccaatttctggttccat |
38455972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 92 - 272
Target Start/End: Original strand, 26033464 - 26033644
Alignment:
| Q |
92 |
ttagaccatttgaatccaccatacttcttacgtaactgaaagactttattttcttcttctttactaaatggacccttttttacaccaggtcttaggttat |
191 |
Q |
| |
|
||||||||||||||| |||||||||| ||| ||| ||| ||||| |||||||||||| |||||||||||||||||| ||| | ||| |||| || |
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|
| T |
26033464 |
ttagaccatttgaattcaccatactttttatagaacacaaaaacttttgtttcttcttcttcactaaatggaccctttttcacatctggttgcaggtgat |
26033563 |
T |
|
| Q |
192 |
tataccatctaaaacggcaacttcttccgaagtgtgcaagtcctgtgttctttgatacctcgtcccaatttctggttccat |
272 |
Q |
| |
|
|||||||||| | ||| |||||| | ||| | || ||| || | || || |||||||||| ||||||||||||||||| |
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|
| T |
26033564 |
tataccatcttagacgacaacttttaccgcaacgtataagcccggcatttttcgatacctcgttccaatttctggttccat |
26033644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 56 - 272
Target Start/End: Complemental strand, 38342593 - 38342375
Alignment:
| Q |
56 |
aagtaaaacatgaacaaaaata--cctcgcgagcgaatttagaccatttgaatccaccatacttcttacgtaactgaaagactttattttcttcttcttt |
153 |
Q |
| |
|
||||||| |||||||||||||| ||||| |||| | |||||||||||||| ||||| |||| | ||||| ||||| ||| | |||||||||||| |
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|
| T |
38342593 |
aagtaaagcatgaacaaaaatatacctcgagagccatcttagaccatttgaactcaccaaacttagaaaataactcaaagaatttttcttcttcttcttt |
38342494 |
T |
|
| Q |
154 |
actaaatggacccttttttacaccaggtcttaggttattataccatctaaaacggcaacttcttccgaagtgtgcaagtcctgtgttctttgatacctcg |
253 |
Q |
| |
|
||||||||||||||| ||| | |||||| ||| ||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||| |
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|
| T |
38342493 |
gctaaatggaccctttcttaaatcaggtcgtagagtattataccatctaaaacggcaactgtttccacagtgtgcaagtcccgtgttctttgatacctct |
38342394 |
T |
|
| Q |
254 |
tcccaatttctggttccat |
272 |
Q |
| |
|
| |||||||| |||||||| |
|
|
| T |
38342393 |
ttccaatttccggttccat |
38342375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 56 - 272
Target Start/End: Complemental strand, 38446786 - 38446568
Alignment:
| Q |
56 |
aagtaaaacatgaacaaaaata--cctcgcgagcgaatttagaccatttgaatccaccatacttcttacgtaactgaaagactttattttcttcttcttt |
153 |
Q |
| |
|
||||||| |||||||||||||| ||||| |||| | |||||||||||||| ||||| |||| | ||||| ||||| ||| | |||||||||||| |
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|
| T |
38446786 |
aagtaaagcatgaacaaaaatatacctcgagagccatcttagaccatttgaactcaccaaacttagaaaataactcaaagaatttttcttcttcttcttt |
38446687 |
T |
|
| Q |
154 |
actaaatggacccttttttacaccaggtcttaggttattataccatctaaaacggcaacttcttccgaagtgtgcaagtcctgtgttctttgatacctcg |
253 |
Q |
| |
|
||||||||||||||| ||| | |||||| ||| ||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||| |
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|
| T |
38446686 |
gctaaatggaccctttcttaaatcaggtcgtagagtattataccatctaaaacggcaactgtttccacagtgtgcaagtcccgtgttctttgatacctct |
38446587 |
T |
|
| Q |
254 |
tcccaatttctggttccat |
272 |
Q |
| |
|
| |||||||| |||||||| |
|
|
| T |
38446586 |
ttccaatttccggttccat |
38446568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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